barSeed - Barley Seed Development Database

Probe CUST_19880_PI390587928

Source Contig U35_17180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19880_PI390587928	Hv_44K_v2	CAATTAGGATTCGATCTGTCAGAAGGTGTAATTGGTGGCACGGGGTATGAGATGCAAAAG	480	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.575	2.195	1.286	0.818	0.255	0.222
Raw	1563.751	3451.085	1715.033	1747.772	189.672	178.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377021	1913	2e-24	1776 - 1835	100	60 / 60	plus	ABC20294
MLOC	MLOC_76410.2	1640	2e-24	132 - 191	100	60 / 60	minus	ABC20294
MLOC	MLOC_76410.1	2654	2e-24	205 - 264	100	60 / 60	minus	ABC20294
JLOC1	JLOC1_50953.1	2508	8e-25	2241 - 2300	100	60 / 60	plus
Harvest21	ABC20294	649	3e-25	481 - 540	100	60 / 60	plus	ABC20294
Harvest35	U35_17180	817	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_17180 817 Hv_44K_v2
GGCCCAGCGAGCTCTTCCCGCTGGAGATGCGGTCGGCGGGGCAGAGCGTGGTGGTGTGCG
TCAACCTCTTCTGGACGGCCGCCGTGGCGCAGTGCTTCCTGGCGGCCATGTGCCACCTCC
GGTGGGGGGTCTTCATCCTCTTCGCCGCGCTCATAGTCGTCATGTCCATCTTCGTCATCC
TCCTGCTGCCGGAGACCAAGCAGGTGCCCATCGAGGAGATATGGCTGCTCTTCGACAAGC
ACTGGTACTGGAAGCGGATCGTCACCAAGGACCCAAAGTACCAGGGACACCACCAACGCC
AGGAAATCGCCGCCGCCGCCGCCGTCAAGCCCGTCGCCACATCAGAATCAGATGCTTAAA
TATTAGACGTCGATCCATGAAGATGATGCGTGTTTTAATAAGATTACAATGCATGGGTTC
ATAGGTGTGTGTGTGTGTGTGTTCTTGTCCAAGACTCGGTGTTCTTAGTTCTTACGAGTT
CAATTAGGATTCGATCTGTCAGAAGGTGTAATTGGTGGCACGGGGTATGAGATGCAAAAG
CACGGAAGTTTATGTGCGTGTGTGACGCTACGACGGCAGCATCAGCGTGATCGATTTCCC
GGATGGGCCGAAAGGAGGAGGCATCATCAGATGCACGAATTACACGGCCCATTTGGGCAG
ATGGTCGGTACCCATCACAAAATCAACAGAAAACAATGATGAATTCTGAATTAGTTCTTG
TACGAGGTAATTAACATTCTCCATTTCTTTCACTGTAAAAAGAAACATCTTCCATTTCTT
GGTGGGAGTATGATCCTTCAGGAATATGAATGGTGCC

Homology of Contig U35_17180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g28000.1	532	9e-63
Arabidopsis v10	None