barSeed - Barley Seed Development Database

Probe CUST_19878_PI390587928

Source Contig U35_17181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19878_PI390587928	Hv_44K_v2	AGTTTAGTTGGTTGGTTAGACTAGTAGTAGTGGTGATCTCTGCAGTCATGGTTATCTCTC	496	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.348	1.802	1.543	0.846	0.282	0.317
Raw	43728.667	91153.933	66994.067	59476.367	6699.957	8342.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28117.1	365	2e-24	169 - 228	100	60 / 60	plus	ABC06346
JLOC1	JLOC1_18907.1	356	8e-25	170 - 229	100	60 / 60	plus
Harvest21	ABC06346	636	3e-25	497 - 556	100	60 / 60	plus	ABC06346
Harvest35	U35_17181	636	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_17181 636 Hv_44K_v2
GGCTGCATGAATTCGACGCTAAGCCACGATCCATCCAGTCCACCACCGCAGGGTTTGAGA
AGCCAAGCCAAGCACAGCCACCGTCTGCTGCTTTCTTGCTTTGCTTTGCTTGCTTCTCTT
TCTCTGCGACCAGATCCTCCCACCGTCTCGTCCCAATGGCCGCCGTCTCCGCCAAGCTGT
CCGTCGCTCTCCTGGCCGCGGTGGTGCTCGTGGCGCTCGTTGCGTCGGCGGCGGGCAGGA
TCGTGGACCGGGAGGATGAGTTCTTCCTCGGCAGCCTCGCCCCCTCGCTCGCCCCCGCGC
CTGCACCGGCGGCGGTGCACGGCGCGGCAGGCGCCGTCGCGCCCGGGGCGTGGGCCGTGG
CCGCCGTCGTCTCGCTCCTCGCCTTCCTCGCTCACTGATGCGTCGTTGCGCTGAGGACAG
TGACGGGTGCCTGGCTTCTTGGGAGATGGGGTCCTGCAATCTGAATTGCGGCGAGTCGCG
TCTGTTTGTTTCGTTCAGTTTAGTTGGTTGGTTAGACTAGTAGTAGTGGTGATCTCTGCA
GTCATGGTTATCTCTCTCTTTTGCCTGTATAAGAGAGAAAGTATGTTTTAAATAATATTA
TTTATTGATTATTCTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None