barSeed - Barley Seed Development Database

Probe CUST_19875_PI390587928

Source Contig U35_17183

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19875_PI390587928	Hv_44K_v2	GGAGAAGTGCTCTCATGTTGATTTCTTTGTTGCAGTAGATAGCAATAACAAAATTTCGAT	971	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54963.4	4206	2e-24	4059 - 4118	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.2	4470	2e-24	4393 - 4452	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.3	4317	2e-24	4214 - 4273	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.5	3570	2e-24	3450 - 3509	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.1	4837	2e-24	4717 - 4776	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
JLOC1	JLOC1_35422.3	4865	8e-25	3274 - 3333	100	60 / 60	minus
JLOC1	JLOC1_35422.2	4695	8e-25	3104 - 3163	100	60 / 60	minus
JLOC1	JLOC1_35422.1	4736	8e-25	3145 - 3204	100	60 / 60	minus
JLOC1	JLOC1_35421.1	4478	8e-25	4182 - 4241	100	60 / 60	plus
Harvest21	ABC07977	184	3e-25	76 - 135	100	60 / 60	plus	ABC07977
Harvest35	U35_17183	1080	3e-25	972 - 1031	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_17183 1080 Hv_44K_v2
GGCGTCTTCGGTGTTCGAGATCCTGGACAGGAAGACGGAAGTCCAGATCGACACCGGCGA
CGACATCAAGAAAGTGGAGGGAGTGATCCAACTGCGGGACGTGGAGTTCCGGTACCCGTC
GAGGTCGGAGGTGGCCGTGTTCAAAGGGCTCGACCTCCTGATGAAGGCCGGCAAGAGCAT
GGCGCTCGTCGGGATGAGCGGCTCCGGCAAGAGCACCGTTCTTTCGCTCATCCTGCGCTT
CTACGACCCGATCGCCGGAAAAGTCTTGATCGATGGAAAGGACATCAAGAAGCTTAGGCT
GAAGTCGCTGAGGAGGCATATTGGCCTGGTGCAGCAAGAGCCGGCGCTGTTCGCGACGAC
GATCTACGAGAACATTCTCTATGGCAAGGACGGCGCGACAGAGGCCGAGGTCGTTGAGGC
GGCCAAGCTGGCCAACGCGCACACTTTCATCAGCTCGCTGCCAGAGGGGTACCAGACCAA
GGTCGGGGAGCGCGGCGTGCAGCTGTCGGGCGGGCAGAAGCAGCGCATCGCCATTGCGCG
CGCCATCGTCAAGGACCCGGCCATCCTGCTCCTGGACGAGGCGACGAGCGCGCTGGACGT
GGAGTCGGAGCGTGTGGTGCAGCAGGCGCTGGACAGGGTGATGAAGAACCGGACCACCGT
GATGGTGGCGCACCGGCTGTCAACGATCAAGAACGCCGACGTCATCTCGGTGATCCAGGA
CGGCAAGATCATCGAGCAGGGGGATCACCAGCACCTGATCGAGAACAAGAATGGTGCCTA
CCATAAGCTCGTCAACTTGCAGCAGCAGCAGCAGCAGTTGCAGGGGGGGCAGAGCTCATG
AGCTCACTGGAGAAGAATCATGTGCTTCTGTATCCAGCTGCCCCTTTCGTTGCTTCCCTC
AAGTACATCGAAATGTAAAAGCTCTGCTCTACATTTTCTTTTTCTTAAAATGTGTGTTCA
CCATTATACAGGGAGAAGTGCTCTCATGTTGATTTCTTTGTTGCAGTAGATAGCAATAAC
AAAATTTCGATATAGGATATATATCAATATATATATATATGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46680.1	1265	5e-150	protein\|multidrug resistance protein, putative, expressed
Brachypodium v1_2	Bradi3g52220.1	1257	4e-164
Arabidopsis v10	AT1G10680.1	1227	2e-129	\| Symbols: PGP10 \| P-glycoprotein 10 \| chr1:3538470-3543782 REVERSE LENGTH=1227