barSeed - Barley Seed Development Database

Probe CUST_19874_PI390587928

Source Contig U35_31477

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19874_PI390587928	Hv_44K_v2	TGCCCGTGCTGCGCTCAAACACCGGCGGGCTCATCCTCAAGTACAACTCCATGCAGGGCT	329	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367784	1397	2e-24	335 - 394	100	60 / 60	plus	ABC09108 ABC09109
MLOC	AK353695	2076	2e-24	1116 - 1175	100	60 / 60	plus	ABC09108 ABC09109
MLOC	MLOC_10609.2	1011	2e-24	127 - 186	100	60 / 60	plus	ABC09108 ABC09109
MLOC	MLOC_10609.3	1266	2e-24	105 - 164	100	60 / 60	plus	ABC09108 ABC09109
MLOC	MLOC_10609.1	1321	2e-24	160 - 219	100	60 / 60	plus	ABC09108 ABC09109
JLOC1	JLOC1_6948.1	1333	8e-25	160 - 219	100	60 / 60	plus
Harvest35	U35_31477	389	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (389 bp)

>U35_31477 389 Hv_44K_v2
GTTCCTCACCACCACCAGTCCACCGCCCACCGCTCACCGCTCACCGCCGGCGTACGAAAT
GCTGTCCGCGTCCCTGAAGCCGCCGCCCTCCCTCGCGCCGATCTCCCCGTCCTCCCGCGC
CCCCGCGCCGGCCGCCGCTGCCTCCTTCCCTCCCCTCCTTCCCAGCCGCGGCCGCGTCCG
CCTCTCGGCGGCCGCGTCCGAGGGCGCCACCGTCAGCCAGGAGGACGCCGCGTCCGTCTC
CGCCGCGTTCGAGGAGGCGCGCCTGGCCCAGTTCGCGGCGGACTGGAAGGCTGTGCGCGC
GGACAAGGACCAGGGGAAGGTCCTCACGCTGCCCGTGCTGCGCTCAAACACCGGCGGGCT
CATCCTCAAGTACAACTCCATGCAGGGCT

Homology of Contig U35_31477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None