barSeed - Barley Seed Development Database

Probe CUST_19873_PI390587928

Source Contig U35_17184

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19873_PI390587928	Hv_44K_v2	CTGTGAAAATGAAACCCTATCCGAATACCTAAGCACGAACGCTTTATATTTCTTACTAAT	1687	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37216.1	3974	2e-23	3707 - 3764	100	58 / 58	plus	ABC07979 ABC16427
JLOC1	JLOC1_24071.1	4022	1e-23	3623 - 3680	100	58 / 58	plus
Harvest21	ABC07979	1084	4e-24	994 - 1051	100	58 / 58	plus	ABC07979
Harvest35	U35_17184	1818	3e-25	1688 - 1747	100	60 / 60	plus

Contig Sequence (1818 bp)

>U35_17184 1818 Hv_44K_v2
GTCATCCATGTTCTTGATATTTGGTGCAGTCTACTTCTTGTCGCTCCCTGTCGGCTCATA
CTTTTTCTCAGTGGCTGGGTGCAAGCTCATCAGAAGGATCAGACTAATGACTTTTGAGAA
GGTTGTCAATATGGAGATTGGATGGTGTGATGACCCACATAACTCAAGTGGCTCAATTGG
GTCAAGGCTATCGTCAGATGCAGCAAAAGTTAGAGGGCTTGTGGGTGATACACTTCAACT
GGTTGTGCAGAACACTTCAACATTAGTTGCTGGCCTGGTAATTGCTTTCGTATCAAACTG
GGAGCTATCTCTTATCATTTTGGCGTTGATACCACTCATCGGCCTGAATGGATGGATCCA
GATGAAATTTATCCAGGGATTCAGTGCAGATGCAAAGATGATGTACGAGGAGGCAAGTCA
AGTGGCAAATGATGCAGTAAGTAGCATAAGGACAGTGGCCTCATTCTCAGTTGAAGAGAA
GGTGATGGATTTGTACAACAAAAAGTGCGAAGGACCGCTACAAACAGGAATCAGGACAGG
AATAATAAGTGGTATTGGTTTTGGAGTTTCCTTCTTTTTGCTGTTTGGAGTCTACGGAGC
AAGCTTCTATGCTGGTGCTCGGCTTGTCGAGGATAAGAAAACAACATTTCCCAAAGTTTT
CAGGGTGTTTCTTGCTCTCACAATGGCAGCAATCGGGGTATCGCACACTAGCACCCTCAC
TTCAGATTCCTCCAGAGCAAGATCAGCCGTATCTTCTATATTCGCCATCGTGGATCGTAA
ATCGATGATTGACCCAAGTGATGACGCCGGGGTGAATGTAGAACCACTAAGGGGCGATAT
CGAGTTTCGGCACGTGAGGTTCAGATACCCGACCCGCCCTGACATTCAGATCTTCGAGGA
CCTATGCTTGACAATCCAGTCAGGAAAGACTGTCGCGCTTGTCGGGGAGAGCGGCAGCGG
CAAATCGACGGCGATATCACTGCTGCAGAGATTCTACGACCCTGACGCAGGCCACATACT
TCTGGACGGGGTGGACATCCAGAAATTCCAGGTGAGGTGGCTGAGGCAGCAGATGGGGCT
GGTGAGCCAAGAGCCGGCCCTCTTCAACGACACGATCCGAGCGAACATTGCCTACGGAAA
GGAAGGGGAGGCCACGGAATCAGACATCGTGTCCGCCGCGCAACTCGCGAATGCCCACAA
GTTCATCAGCTCACTCCATAAGGGGTACGACACGGTGGTCGGGGAGCGCGGCGCTCAGCT
GTCGGGAGGGCAGAAGCAGCGGGTGGCGATCGCGCGGGCCGTGGCCAAGGACCCCAGGAT
CCTGCTGCTGGACGAGGCGACGAGCGCGCTGGACGCGGAGTCGGAGCGGGCGGTGCAGGA
CGCGCTGGACCGGGTGGCGGCGAGCCGGACGACGGTGGTGGTGGCGCACCGCCTGTCGAC
GGTCCGGGGCGCCGACGTCATCGCGGTGGTGAAGGACGGGGCGATCGTCGAGAGGGGGAC
GCACGACGCCCTGATCGCCGTCAAGGGCGGCGCGTACGCGTCCCTCGTCGCCCTCCACTC
CGCGGCGGAGTAGGAGCGCCGCTCCAAGAGGGGCGCTCTCGCGAAACTGTGCCGAACCCG
CGAAGGTGTTGGGGGTGGAGTGGCACGCACGGTAATTATTACCACGTTCGGTTCAGGTGT
CAGCTCGCTGTGAAAATGAAACCCTATCCGAATACCTAAGCACGAACGCTTTATATTTCT
TACTAATAATACTTATTATTAAAAAAAGGAACAAGAAAGTTCTATAGGAATACCAATCCC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_17184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g04610.1	525	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi2g36897.1	1293
Arabidopsis v10	AT3G62150.1	1296	\| Symbols: PGP21 \| P-glycoprotein 21 \| chr3:23008755-23013579 REVERSE LENGTH=1296