barSeed - Barley Seed Development Database

Probe CUST_19866_PI390587928

Source Contig U35_17188

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19866_PI390587928	Hv_44K_v2	GGAGGGTGTAAAGCAAGTTCTTTTGTTGATTGGTCAAACAAACTTGACAGAAATTAAATC	500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369411	601	7e-23	515 - 571	100	57 / 57	plus	ABC06741 ABC06742
MLOC	MLOC_23011.1	951	3e-22	329 - 384	100	56 / 56	minus	ABC06741 ABC06742
JLOC1	JLOC1_15912.1	618	1e-22	46 - 101	100	56 / 56	minus
Harvest21	ABC06742	788	3e-25	716 - 775	100	60 / 60	plus	ABC06742
Harvest35	U35_17188	573	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_17188 573 Hv_44K_v2
CATTTGGAAGCATCATCCATCCATCCACCCTACTCTCTCTTACCTAGGCTCCCACACCCT
CTTACCTCAAAGCGAGGCAGCAGCTAGCGGCGGCGCAGCAGCAAGAAGAGAGGAGGAGGA
GGTGATAGGACATGGCGTCGATGATGGGAGGAGACTTCGTGGAGGCCTACGTGCTCAAGA
ACGCCTACAAGGAGAAGATGAGGCGCATGGACCAAGCCGAAGCGGCGGCGCTCGACGACG
CCAAGAGCGGCAAGGACGACAAGCAGGCCGCCGGCGCCGCTGGAGACAAGAAGAAGGCTG
CTGGTGGTGGCGCGAGCGGCAGGGGAGGATTCTTTGGCCTCATGAAGAAGAAGGTGCACC
CCAAACCCAAAGCGGCGGCGGTGGCGGCTACTTCCTCTTGATTGTATTACAGTACTGTAT
TTGCCATGCCACGAAGTTGTAAGCCGCAGCTTTCTTCTAGCTAGGAGCGTGTGTGTGTTA
GTTTGTTCTTCCGAATCCAAGGAGGGTGTAAAGCAAGTTCTTTTGTTGATTGGTCAAACA
AACTTGACAGAAATTAAATCAAGAATAATCCTG

Homology of Contig U35_17188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None