barSeed - Barley Seed Development Database

Probe CUST_19865_PI390587928

Source Contig U35_17189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19865_PI390587928	Hv_44K_v2	GGAGGAGTGTGTAAAGCAACTTCTTTTGTTGATTGGTCAAACAAAGTTGACGAAAATTTA	467	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371214	549	2e-24	472 - 531	100	60 / 60	plus	ABC06741 ABC06742
MLOC	MLOC_44778.1	664	2e-24	585 - 644	100	60 / 60	plus	ABC06741 ABC06742
JLOC1	JLOC1_29042.1	664	8e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC06743	561	3e-25	468 - 527	100	60 / 60	plus
Harvest35	U35_17189	548	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_17189 548 Hv_44K_v2
GCATTTGCAAACCATCATCCATCCTAGGGTCCCGGTAGCTATAGCTGCTTACTTTAAACA
AGGAAGAAGAAGCAGCGGCAGCTCAACAAGAGTTCAGGAGAGGGACATGGCGTCGATGAT
GGGAGGAGACTTCGTGGAGGCCTACGTGCTCAAGAACGCATACAAGGAGAAGATGAGGCG
CATGGACCAAGCCGAAGCGGGGGCGCTCGACGGCGCGAAGAACGGCAAGGAGGCCGCCGG
CGCCGCCGGAGAGAAGAAGGCTGCTGGTGGTGGTGGTGCGAGCAGCAGGGGAGGCTTCTT
TGGCCTCATGAAGAAGAAGGTGCACCCCAAACCCAAAGAACCGGCGGCGGCGGCTACTTC
CTCTTGATTGTATTACAGTACTGTATTTGCCATGCCACGAAGTTGTAAGACGCAGCTTTT
CTTTCTAGCTAGGAGCGTGTGTGTGTGTGTGTGTGTTCTTCCGAATCGGAGGAGTGTGTA
AAGCAACTTCTTTTGTTGATTGGTCAAACAAAGTTGACGAAAATTTAAGTGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_17189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None