barSeed - Barley Seed Development Database

Probe CUST_19861_PI390587928

Source Contig U35_29160

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19861_PI390587928	Hv_44K_v2	ATTACCTTGCTGACATTTCTCCTCCTGATTCTAGTTGTTCACTTGCTTAGTTCCGAGCCA	533	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62640.1	935	2e-24	668 - 727	100	60 / 60	plus	ABC13128
MLOC	MLOC_62640.3	1543	2e-24	656 - 715	100	60 / 60	plus	ABC13128
Harvest21	ABC28359	634	3e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_29160	634	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_29160 634 Hv_44K_v2
ACGAGGCCCGCCGAAATAAACCCCAACTCGTCCGCTCCGGTGATCCGCCGCCCCAGGAGG
CGAAGCCCCACGACGCATCCGCGCGGAGCCTCCGCCCGCCATGACTGAGTATTGGGTGAG
CCAAGGAAACAAATGGTGCGACTTGTGCAAAATCTTTATATCTAACAATCCGTTCAGCAT
CAGGACACATGAACTCGGCAAACGCCACAAGGACAATGTCACCCAAAGATTGTCTACGAT
GCAAAAGGATGGCGCTGCTAAGGAAAAGGAGCAGCAGCAAGCAGCTAAAGCCCTCCAGCT
GATAGAGGCTAAAGCTAAAAAGAGTTACCAAAAAGATTTGGAGAATAACCAGAGAAACAC
CGATGGTGACAGTTCTGCAGCACCTGGAGAAGGTTTGGTTCTTTAATACCTAAATGCATA
ATGCACTGCATCCTTTATTTCCCAATTGTGTGCATGGCCATTTTTTTGTTTGTATAGCAC
AAATTAGATCTCGGTCTATTATTAGGTTCTCCTTTGTTTACCCTTGAACTTCCATTACCT
TGCTGACATTTCTCCTCCTGATTCTAGTTGTTCACTTGCTTAGTTCCGAGCCAGATGGCC
ACATCACAGCAGGAGAGTGTGATTGCTGAATCAA

Homology of Contig U35_29160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None