barSeed - Barley Seed Development Database

Probe CUST_19851_PI390587928

Source Contig U35_29166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19851_PI390587928	Hv_44K_v2	ACAATCTGCTAAACAGGAGTCCAGCTCTGATAGTAGTGACGAGAGTAGCTCTGATGATGA	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57554.3	2540	2e-24	637 - 696	100	60 / 60	plus	ABC06795
MLOC	MLOC_57554.6	2217	2e-24	1489 - 1548	100	60 / 60	minus	ABC06795
MLOC	MLOC_57554.5	2620	2e-24	1895 - 1954	100	60 / 60	minus	ABC06795
MLOC	MLOC_57554.4	2701	2e-24	1994 - 2053	100	60 / 60	minus	ABC06795
MLOC	MLOC_57554.2	2700	2e-24	1975 - 2034	100	60 / 60	minus	ABC06795
MLOC	MLOC_57554.1	2712	2e-24	1926 - 1985	100	60 / 60	minus	ABC06795
JLOC1	JLOC1_37321.2	2633	8e-25	674 - 733	100	60 / 60	plus
JLOC1	JLOC1_37321.1	2329	8e-25	370 - 429	100	60 / 60	plus
Harvest21	ABC06796	1070	3e-25	532 - 591	100	60 / 60	plus
Harvest21	ABC06795	2528	3e-25	590 - 649	100	60 / 60	plus	ABC06795
Harvest35	U35_29166	598	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_16922	2554	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_29166 598 Hv_44K_v2
CGAGGTGCGACTCGGGGNAACTAGGGATTCCTCCCCGCCGCCGCCGCCGCCAACCTCCCG
CCGAGCTCAGAAATACTACCATGGGTAAGTCGAGCAAGAAGTCCGCTGTCGAGGCTGCAC
CTGCCGCTGCGCTGGTCCCAGATGTAAAATCTGGAAAGAAAGGCAAGAGAAATGCGGAAG
ATGACATTGAGAAGGCTGCCAGTGCCAAGAAGCAGAAAACTGCACCTGAGAAGGTCGTGC
CCGTGAAAAGTTATCTTAAAGTCAAGAAGAAGCTCCCTGCAAAGAAGGTCGAGAGCAGCA
GTTCTGATGAGGATTCTTCAGAATCTGAGGACGAGGCTGCACTGTCTTCTAAACAGGAGT
CCAGCTCTGATAGCAGTGATGAGAGCAGTTCTGATGATGAACCTGCTAAAAAGCATGCTG
CTGCTTCAAAGAAACCTGCTGCACTTGCTACCAATGGTTCAAAGATTGTCAAGTCTGACA
GCAGCAGCTCTGACAGCAGCTCTGATGAGGATGTGATGGTCCTACCCAAGAAGGCTGCAC
AATCTGCTAAACAGGAGTCCAGCTCTGATAGTAGTGACGAGAGTAGCTCTGATGATGA

Homology of Contig U35_29166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None