barSeed - Barley Seed Development Database

Probe CUST_1984_PI390587928

Source Contig U35_46764

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1984_PI390587928	Hv_44K_v2	GGATCGTCAGATCATATCGTCGTACTACTAGTACGATACTATGTGATTTTCATTTTTAGT	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8687.1	652	2e-24	17 - 76	100	60 / 60	minus	ABC05534 ABC47285
JLOC1	JLOC1_5760.1	639	8e-25	574 - 633	100	60 / 60	plus
Harvest21	ABC47285	408	3e-25	24 - 83	100	60 / 60	minus	ABC47285
Harvest35	U35_46764	408	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (408 bp)

>U35_46764 408 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCTAGTACTAAAAATGAAAATCACATAGTATCGTACTAGTAGT
ACGACGATATGATCTGACGATCCGATACAACCGACAAGCACATGATACAACCTAGCATCC
TTATATTGAAAACCTTGGGCTCAGCTGAATATCTTGCGCAGACGCTCTCCTGAATAGGCG
AACGACGTCTCAGTCTCCTCCAGGCAGTGGTTCTTCTCTTCCCGGGTCCAGCCAGAAGCA
ACTTGATTAAGTTTTTCGCGGACATTCTGCAGCAGCTCGGACAGGGTACCTTCCCACTTG
TAGAATTCCAGCTCTTTCTTATCCAGAATCTTGTCAGCAATCTTTTTGCCGGTCAACCTA
CCTCCAGCAGATTGCCCAAAGTACATATTATAGAAGTGACAGAAAAAT

Homology of Contig U35_46764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None