- Probe CUST_19845_PI390587928
- Source Contig U35_31483
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_19845_PI390587928 | Hv_44K_v2 | ATGATCCTGATGAACAAGCCGGAGGAGGGGTACACCACCTTCGCCAACGCGCACGTCCTG | 370 | GeneList: floralwhite MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.408 | 0.682 | 2.213 | 2.575 | 1.233 | 1.331 |
Raw | 15.783 | 39.333 | 117.476 | 207.481 | 38.445 | 44.112 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK370987 | 2829 | 2e-24 | 1583 - 1642 | 100 | 60 / 60 | plus | ABC12417 ABC14748 |
MLOC | MLOC_52826.1 | 3855 | 7e-23 | 1085 - 1144 | 98 | 59 / 60 | plus | ABC12417 ABC14748 |
JLOC1 | JLOC1_33871.1 | 2724 | 4e-23 | 1085 - 1144 | 98 | 59 / 60 | plus | |
Harvest35 | U35_31483 | 462 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus |
Contig Sequence (462 bp)
>U35_31483 462 Hv_44K_v2 CAAGGCCATCGAGCGTGGCATCTTCGTCAGCGCCGCCGCCGGCAATGCCGGGCCGACTGC AGGCAGCGTCTCCAACTGCGCGCCGTGGATGCTCACGGTCGCCGCCGGCACCACGGATCG CGCGATACGCACGACGGTGAAGCTCGGCAACGGCCAGGAGTTCGACGGCGAGTCCCTGTT CCAGCCCCACAACAACTCCGCCGGGCGGCCGGTCCCGCTCGTGTTCCCAGGCGCCAGCGG CGACCCGGACGCCCGCGGCTGCAGCTCCCTCCCCGACTCGGTGAGCGGCAAGGTGGTGCT CTGCGAGAGCCGCGGCTTCACGCAGCACGTCGAGCAGGGCCAGACCGTGAAGGCGTACAG CGGCGCCGGCATGATCCTGATGAACAAGCCGGAGGAGGGGTACACCACCTTCGCCAACGC GCACGTCCTGCCGGCGTCGCACGTCAGCAACGCCGCCGGCTC
Homology of Contig U35_31483 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os03g02750.1 | 755 | 7e-73 | protein|OsSub25 - Putative Subtilisin homologue, expressed |
Brachypodium v1_2 | Bradi3g31690.1 | 737 | 3e-64 | |
Arabidopsis v10 | None |