barSeed - Barley Seed Development Database

Probe CUST_19844_PI390587928

Source Contig U35_17190

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19844_PI390587928	Hv_44K_v2	GTGCTAGCTCTGTTAATGTGTTAAATTCTTTTGCTTGGAAGACAATTGTAACTGATGATG	2118	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.227	1.422	2.845	1.521	0.460	0.555
Raw	221.333	447.763	739.056	637.160	65.249	87.753

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55375.2	4306	2e-24	4139 - 4198	100	60 / 60	plus	ABC08478 ABC51333
MLOC	MLOC_55375.1	2051	2e-24	1839 - 1898	100	60 / 60	plus	ABC08478 ABC51333
JLOC1	JLOC1_35711.1	2082	8e-25	1836 - 1895	100	60 / 60	plus
Harvest21	ABC51333	262	3e-25	170 - 229	100	60 / 60	plus	ABC51333
Harvest21	ABC08478	1918	3e-25	1813 - 1872	100	60 / 60	plus	ABC08478
Harvest35	U35_17190	2216	3e-25	2119 - 2178	100	60 / 60	plus

Contig Sequence (2216 bp)

>U35_17190 2216 Hv_44K_v2
AAGAACCACTCACCTTCCCGCAGCCGCTCTCTCTCTCTCTCTCATCACGCACATCACGCA
CGCTGGTAGCTGCAGCCGCTCGCTCTCATCCGGTAGCTAGCCGGCCGTTGGCGCCACTGC
TGCGGGCGCTGCTGCTTAAAGGAGGAGGGTGGGAGCAATGTCGGAGCAGCCATTGCCGCA
GCCGCGGAGCAGCATGAGGGAGGCGCTGCAGAAGGAGGACAAGGAGAAGGCGTCGTCCGC
GGCGCCCCCGGCCAAGGAGAAGGCGGCCGTGGCCCCGCCGCACGTCGCCGCGCCCCCCAT
GGCCAAGAACGGCGGTGGCGGGGGGAAGGGCGGCAACGGGGGCCAGCCGCCGGCGCCGGA
GGAGACGACGCGGGAGATCCAGGTGGTGCGCGAGGCGTACCGGCAGCCGGCGGCGCCCGC
GTACGTCATGCCCGAGGAGCCCCCCGCCATGGTGGAGCTCGTCGGCTGGTACCTCTACGG
CTTCTGCTCCTTCTTCATCACCCACCTGCTGCTGCCGGTGCTCTTCCCGGCCATCGTCAC
CCAGGTCGCCTTCCCCTCCTCCGACTTCAACCCCGAGGCCAAGTACACCGTCAAGGGCGC
CTCCTGCTCCGTCCACGAGATGTCCATGTACCAGAGGCTGACCAGGTACACCATTGCCAT
ATCTAGCTCCCACATGTCGCCACTGGGCTGGAGCGCCCTGTCGTGGGCGATCGGCATCCT
CCTCGTGGCGCCGCTCCTCACCCAGGTTGCGCACCACCTTGACAGGGGCCAGTACCAGTC
GCTCATCCTCATCGCGGCGACGTCGTTCGGCTCGTTCTTCTGCCTGCTCACTGGCTTCTT
CAAGACGGTCTGGGTGTTCCTGTTCTACATCCTCTTCATCGCTGCGTCCATCATCATTGC
TGAGGCTGTGCACACCCGCAACCTCGGGCTGATGATCCGTGGTCTTGCTGCTCACGACTC
GGGCAAACACCTTGTCCTCCGCCGCCGCGCTGCTGCCAGCCAGCTCAGCCTCTACTGCAC
CGCCATCGGTGGCATCGGGGCAGCACTCATGGCTGCATTCATGTACCACATGCTGAGGCG
CACTGACCAGCTCACCGGCCTCTGGGTCGTCTCCATCTTCAGTGGCCTCATCTGGTTCAT
CGGCATCTGCCATGGCCTCTTCACAAACAGGCCCAGCAGCTCATCACCCACCACCGCATT
CGAGCCAAACTTCTTCAGCAAGCTCAGGTACAGCATGACCATTGGTCGCTACCCACAGGC
CATTGGAAGCTTGGTGGCAGTGTTCCTGTCATCTTTCGCCACAATGTGCATCTTCACCAG
CGGCACTCTGTATGCCATTGGCGGCGTCTGCATCAAGCCGGTCCTCGTGCTCGCGCTGTG
GATCCTCTACTTCCTGTTCCCGTTGATCTCGCTGCCGCTGCTCCACCCAATCCAGATCAT
CATCCGCGCTGATGCCGTCCGCATGCAGCTGCTTGGGTTCATCATCGCCCTGTTCGTGTC
CGGCGCCGGGTTCTACTTCAAGAGCCACAGGTGGAGGGCTGCCCACATCATCATCATCGC
CCTTGTCCAGAGCACGGCCAACGGCATCCTCTACTCGTTCGGCCGCATTCTGCTGCTTGA
CGCCTCGCCGCCGGGCAAGGAGGGTGCATTTGCTATCTGGTACGCCTACGTCCGCTGCAT
GGGCGCCATGATCGGCTTCGCCGTTGCGTCTGCTGGCCCTGGACGTGCAGGAGGGTCCTT
TGCTGCTGCGTTCCTGGGCAGCTTCCTCGGCATCATCGTGCTGATCTTCGGTAATGTCAG
CAACATCGGGGCGCTGAAGGCAGCAGGCCATCTCAAGGGGATGGAGGACGAGAAGAGGAT
CGGCGAGAAGGGCGAGGGCATGAGCGCCGTCGCCGACTCCGGCGAGTCGAGGGGGAGGGT
ATGATTTACATGGGGTTGGTTGGAAAGAAAGATTGCTGCCATTGTTGTGGTGGGTTGTGC
TTGTGAGAGGGTATGATTTGTTCTTCTTTTTCTCCTGTTTTTTCTTGTTCATGTTTCAGT
GACACTGTTAATCCGGTGCTCTGCCCCCTTTGATGCATGATGATTATGATGATGTTGACA
TAGTGGTAGAGGGAGTGTGTGCTAGCTCTGTTAATGTGTTAAATTCTTTTGCTTGGAAGA
CAATTGTAACTGATGATGATATGGTTCTTTGTTCATCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02370.1	586	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g50280.1	594	0.0
Arabidopsis v10	None