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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_19843_PI390587928Hv_44K_v2CTTGGCCACCCAATTCCTCCATGCATTATATGCATTCAAAGGTGTTATTTCATTCAAATA2339GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1560.4121.0061.4051.0541.315
Raw 738.2093054.6716503.38713871.0673753.1735034.537



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_55934.640042e-24152 - 21110060 / 60minus ABC06594
MLOCMLOC_55934.750262e-24136 - 19510060 / 60minus ABC06594
MLOCMLOC_55934.361502e-242334 - 239310060 / 60minus ABC06594 ABC15956
JLOC1JLOC1_36121.349278e-253762 - 382110060 / 60plus
JLOC1JLOC1_36120.170708e-252177 - 223610060 / 60minus
Harvest21ABC0659424963e-252340 - 239910060 / 60plusABC06594
Harvest35U35_1719124973e-252340 - 239910060 / 60plus



Contig Sequence (2497 bp)

>U35_17191 2497 Hv_44K_v2
GTCCAATTGTAGCTTTCTGCTGCTTTCTATCTAACGTGGAAGATGGCGTCCGTTGCCTGA
TGATTGCTACCGTGACACCTTTCTCGCACTCTAGGACAGCGTCATCTGCAGAGTTTGAAA
GGCGCAAGAGAGCAATTCCTTTGTTGTCTGCCATGTCTCGCAACTTGGAGAGCCCTGTCC
AGACCCAGATGGCAGTTTCAGCCTTGAGCAGCTCTCTGATCGGTGATTACCCTACCAAAA
CTAGAAGCGAGGGGAGGGCTGTTGGATGGAAACGTGTTTTTGTCCAGACTGACACTGGGT
TTGTACTGCCTGTTCAACTAGATCGTGGTGACAGTGTACACACAGTCAAAAGAAAGCTGC
AGGTGGCCCTCAATGTTCCCACTGAGGAGAGTTCACTGACACTTGGTGATCATGTCCTCA
AGAATGATCTCAGCAGCATCCGAAACGATTCCCCGCTGCTCCTGACCAAGACCTTCATGC
ATCGGAGTTCCTCCAGCCCATGCCTGTCTCCTACAAGCAAGGATCTCCAGCAGCAAAGGG
ATAGGGGTGGTCCGATTGAAGTTTTAGTATGTCCAAGCCGCTGCTTTCGGGCAAAGCAGC
TTGTTAAGGATGTTGCTAGGGGCATAAGAAACGGTGTGGATCCAACACTTGTCAATAGTG
GGCTTGGTGGTGCCTACTATTTCAAGAACAGTAAAGGTGAGAATGCTGCCATCGTGAAGC
CAAATGATGAGGAGCCGTTTGCACCCAACAATCCAAAAGGTTTTACTGGGAGAGCCCTTG
GGCAGCCAGGCCTCAAAAGATCAGTTCGAGTTGGTGAGACTGGTTTTAGAGAGGTTGCTG
CATACCTTCTGGACTATGATAGCTTCGCCAATGTCCCCCCGACAGTTCTTGTTAAGATTT
CACACCCTGTATTTAATGTCAATGAAGGTGTTAGTTCAAGCAAGAAGAAGGCTCCTGTGG
GTGATCCGCGAGCTGTCAGCAAGATTGCCTCATTTCAGCAGTTCGCTCCTCATGATTTTG
ATGCTAGTGACCTTGGCACTTCAAGCTTCCCTGTATCTGCTATTCACAGGATTGGTATTC
TTGACATCCGTATCTTCAACACTGATAGACATGCTGGAAATCTTCTGGTAAAAAAGATGA
CAGGAACAGGTCAATTCGGGAATCAGACTGAGCTGATTCCTATTGACCATGGTCTCTGCC
TGCCAGAGTGTTTAGAGGATCCTTATTTTGAATGGATTCACTGGCCGCAGGCGTCAATTC
CATTCTCTGAGGATGAGCTTGAGTACATAGGGAAACTTGATCCAGTGAAAGATGCTGATA
TGCTTCGTATGGAGCTGCCTATGATCCGGGAAGCATGCCTCCGTGTGCTAGTCCTCTCAA
CCATATTTCTGAAAGAAGGCACATTATTTGGTCTTTGCCTTGCAGAGATTGGTGAGATGA
TGAGCAGAGAATTTAACGGGATGGAAGATCAGCCAAGTCAGCTGGAGGTTGTCTGCATGG
AGGCAAGGAGGCTAGCAACTGAACGTGAAGAATGTTCCACAGAACATGATTCTGCAGATG
AAGATGTGACCCAATTTGAACTTGACTGTGAAGATCATGAAATGGCAAAAACGCCACCAG
CCTACCATCTTGAGTTTAAGGGGGGAAGCTCCAGAAACCCGCTCTCTAAATTGGACGAGG
CCATTGAAGAAGAGGAGGATGACACCCAGGAAGAGGAAGAAAGCAATGCAGAAAAGTTAG
CTTGCCCCAAGCCTGTCAATAAGTGGCTTCCTAACATTTCCAAGCTATCAACCTCACTGA
GCAGTGTCAGTCTCATGGAAAAAAGCCAGCGTCAGCTGCCTGCCATTCCCAAGGGTGCGG
ATTCTGCAAAAACCTCTGAGAACAACCAAGTTGGTAACTGGAGGAGCGCGAATGAACAGC
TCCCAACGAGCGCAAGCTTTGTGAAGCTGGCCGACATGGGTGTGGAGACATGGGGCCTGT
TCCTCGAGAAGTTCCAGGAGCTGCTCCCTGGTGCATTCCGCGCGCACAAGCTCGGCGCCA
CTGGGCAAAGGGGGAGGCTGAGGCTGGGCACTTCTTGCCAGTTTTGAGTTAGTGGAGGAG
TAGAGAAGTCGTTTGGCTGCTGCTGTTTGCTGTGGCTTTCTTTTAGGTGTCAAGGTATGC
GGTCTGTCGTCGAATAAAGCCATCCTTTACAAATAGGGTTTGAGCGTTGAATATGCCTGC
TTCAGAGGTCCATGTTCAGATGGTGGCCTTTTCTGTACATAGTTTTCCTTTTTCTTTCTT
TTCTTTTCTTTTCTAGCTAGTTGCTTGGAGGAAAGTTGGGATGTGATGTCTGCCCAGTTC
TTGGCCACCCAATTCCTCCATGCATTATATGCATTCAAAGGTGTTATTTCATTCAAATAA
AATAGACATTCAAGAAAAAGAAAAAAAAAAAAGTGATTAAACATTGTCTAGATTTCAGAG
TAATGTTATATTTCAACTTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_17191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g17290.17010.0protein|phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Brachypodium v1_2Bradi1g43570.16380.0
Arabidopsis v10AT2G03890.16500.0| Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650