barSeed - Barley Seed Development Database

Probe CUST_19838_PI390587928

Source Contig U35_30823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19838_PI390587928	Hv_44K_v2	ATGAGATCCATGCATGTCAATGGCAATGTCCATGTCCATGGATTTGGATGCTGGTGATCA	36	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.195	1.651	2.283	1.003	0.223	0.204
Raw	53.956	104.295	137.853	90.817	7.536	6.778

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64189.2	2802	2e-23	1446 - 1503	100	58 / 58	plus	ABC18481
MLOC	MLOC_64189.1	2416	2e-23	1369 - 1426	100	58 / 58	plus	ABC18481
MLOC	MLOC_64189.3	3053	2e-23	1317 - 1374	100	58 / 58	plus	ABC18481
JLOC1	JLOC1_42115.1	2987	1e-23	1371 - 1428	100	58 / 58	plus
Harvest21	ABC30905	315	3e-25	37 - 96	100	60 / 60	plus
Harvest35	U35_30823	315	3e-25	37 - 96	100	60 / 60	plus

Contig Sequence (315 bp)

>U35_30823 315 Hv_44K_v2
CGACGCGTGGGCGCGACTATCAAAGATGTGTGGGGCATGAGATCCATGCATGTCAATGGC
AATGTCCATGTCCATGGATTTGGATGCTGGTGATCAGCCGTCTGTGTTGGATGTGAAGGT
GATCAAGGAGGATACTCGCCAGCAGCAGGGCCAGATGTGGGGGAATCACACATCGACAGC
AGACTCTGGCACCACTGCCCTGGAGCAAGAAGATGTGGTCAGACTGTCTGGGTTCCCTGA
AAAGGCTGTCCTGAGCACTGTGTTTGAGGAGGGAGATTAAGAAGGCGAAGAGAACGATAA
TGGGGTTGAGGTGGA

Homology of Contig U35_30823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None