barSeed - Barley Seed Development Database

Probe CUST_19836_PI390587928

Source Contig U35_16531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19836_PI390587928	Hv_44K_v2	TTCAGTGATGCTGCTTTGATCTACCTCACTAGTCAATGCAAGAACCTGAAATGCTTGAAT	652	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7311.2	1703	2e-24	741 - 800	100	60 / 60	plus	ABC05501 ABC05503
MLOC	MLOC_7311.1	1845	2e-24	922 - 981	100	60 / 60	plus	ABC05501 ABC05503
JLOC1	JLOC1_4820.1	1596	8e-25	765 - 824	100	60 / 60	plus
Harvest21	ABC05502	712	3e-25	653 - 712	100	60 / 60	plus
Harvest35	U35_16531	712	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (712 bp)

>U35_16531 712 Hv_44K_v2
CAGCCGCCAGTTCTCAGCTGCGGCAGCCGAAGCTCGATTTTCATCCCCCGGAGAACAGAA
CAGAACAGATAGGTCGCCTCCAGCCGGTGGCGGCGCCGCCGCCGCTTCGCTTCTCGGCTT
GCTCGGGCTGGGTTTCTCGGTGAAAATGGTCAATGCACAGATGGTGAGTGGGTACTTAGA
CAATTCGTTCAATGCACTCATGGTTTCTGGTGGCGTTGAGAGTGGACAGACACAGAATGG
TGGCACAGACACTACCTTGTCAGGCTGGAAGGACCTTCCCATGGAGCTTCTTCTGAGGAT
CATATCAGTAGCTGGTGATGACAGGATGGTCATTGTAGCCTGCGGTGTTTGCGCCGGGTG
GCGTGATGCACTAGGTTGGGGAGCCACAAGCCTCTCCTTCTCGTGGTGCCAGGACCACAT
GAATGAGTTGGTGATATCACTCGCCCACAAATTTCCAAAGCTTCAAGTCCTTTCTCTAAG
GCAAATCAAGCCTCAGCTTGAAGACGATGCAGTGGAGGCTGTAGCAAATTCTTGTCATGA
TTTGCGCGAGTTGGATCTGAGCAGAAGCTTCAGGCTCAGTGATCGGTCCTTGTATGCTCT
GGCACATGGGTGCCCTCACCTTACAAGGCTGAACATCAGCGGATGTTCCAATTTCAGTGA
TGCTGCTTTGATCTACCTCACTAGTCAATGCAAGAACCTGAAATGCTTGAAT

Homology of Contig U35_16531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65920.2	380	8e-91	protein\|F-box/LRR-repeat protein 2, putative, expressed
Brachypodium v1_2	Bradi2g56920.1	379	4e-101
Arabidopsis v10	AT1G21410.1	360	8e-54	\| Symbols: SKP2A \| F-box/RNI-like superfamily protein \| chr1:7497479-7499386 FORWARD LENGTH=360