barSeed - Barley Seed Development Database

Probe CUST_19835_PI390587928

Source Contig U35_30824

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19835_PI390587928	Hv_44K_v2	CAAAAGAAGACGGAAGCAAAGCCAGTCCGCACAAGCAAGCAACCTCGACGGACGGTTCTC	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61770.1	794	2e-24	674 - 733	100	60 / 60	minus	None
MLOC	MLOC_61769.1	510	2e-24	304 - 363	100	60 / 60	minus	None
MLOC	AK357407	2459	6e-24	2 - 60	100	59 / 59	plus	ABC23511 ABC32690
JLOC1	JLOC1_40380.1	780	8e-25	657 - 716	100	60 / 60	minus
JLOC1	JLOC1_40379.1	500	8e-25	148 - 207	100	60 / 60	plus
Harvest21	ABC30906	240	3e-25	56 - 115	100	60 / 60	plus
Harvest35	U35_30824	240	3e-25	56 - 115	100	60 / 60	plus

Contig Sequence (240 bp)

>U35_30824 240 Hv_44K_v2
GGCATCTTGTCCAGCTTGGATGCTCAAGGCATCCAACCCCCTCCTCCCTCCCCCTCAAAA
GAAGACGGAAGCAAAGCCAGTCCGCACAAGCAAGCAACCTCGACGGACGGTTCTCGGGAG
CGGGCGCACCACCAAGCTCGTACACTCGCCATATATATCCGCACTCCCCCTCTCTCTCTC
TCCCTCACCCTCCCTGCGTGCCTAGCTCCCCTGCCCCGGAGCTGCGGCTGGTTGATGCGC

Homology of Contig U35_30824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None