barSeed - Barley Seed Development Database

Probe CUST_19833_PI390587928

Source Contig U35_16532

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19833_PI390587928	Hv_44K_v2	TACCCCAGGACATTAACAATATCTGAGCTCTCTGAAGAATATGTGAGCCTTGCTAAAAAA	609	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.164	0.464	1.229	1.604	1.130	1.029
Raw	1059.897	4983.989	11273.410	22625.797	5611.547	5605.377

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7311.2	1703	3e-21	1576 - 1629	100	54 / 54	plus	ABC05501 ABC05503
MLOC	MLOC_7311.1	1845	3e-21	1693 - 1746	100	54 / 54	plus	ABC05501 ABC05503
JLOC1	JLOC1_4820.1	1596	2e-21	1445 - 1498	100	54 / 54	plus
Harvest21	ABC05501	775	3e-25	705 - 764	100	60 / 60	plus	ABC05501
Harvest21	ABC05503	685	6e-22	610 - 663	100	54 / 54	plus	ABC05503
Harvest35	U35_16532	680	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_16532 680 Hv_44K_v2
ACTGACGGGGGAGTTACTAGCCTGGCATCAGGTTGTCCTGAACTTAGGGCCGTCGACTTG
TGTGGCTGTGTTCTTATAACAGATGAGAGTGTGGTTGCTCTTGCAAACGGATGCCCTCAC
CTGCGTTCCCTGGGGCTGTACTACTGCCAGAACATCACCGACCGGGCCATGTACTCGCTG
GCCGAGAAGAGCCGCATCAGGAGCAAGGGCATGAGCTGGGACACGGCGAAGAACAGCCGC
AGCTGCAGCCGCGACGACAAGGATGGCCTCGCCAGCCTGAACATCAGCCAGTGCACGGCG
CTGACGCCCCCCGCCGTGCAGGCGGTGTGCGACTCGTTCCCGGCTCTCCACACGTGCCCG
GATAGGCACTCCCTCATCATCAGCGGCTGCCTGAGCCTCACCGCCGTGCACTGCGCGTGC
GCCCACCACCGGCACCGTGCCGGGGCCGGGAGAGCCATCCTGTCTAACCATGCCTACTGA
GGTCTCTCCCTGTGTGGATCATGGCACGGCCATGAGGTCCCGGTGTGGCGGAGTTTGTAT
CGTGTTGTATCACCGAACGTGAGGTGGAACCGAGGGCACGGTGGAAGCCTGTGTGTCTCT
ACTTGTGGTTACCCCAGGACATTAACAATATCTGAGCTCTCTGAAGAATATGTGAGCCTT
GCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16532 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65920.2	380	6e-75	protein\|F-box/LRR-repeat protein 2, putative, expressed
Brachypodium v1_2	Bradi2g56920.1	379	8e-83
Arabidopsis v10	AT1G21410.1	360	8e-59	\| Symbols: SKP2A \| F-box/RNI-like superfamily protein \| chr1:7497479-7499386 FORWARD LENGTH=360