- Probe CUST_19830_PI390587928
- Source Contig U35_30827
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19830_PI390587928 | Hv_44K_v2 | GCGATGCATACCACACCTTATCGATGGTTTGAAATTCAGGCACCGTAATTAAGCAAAAAA | 353 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 21.827 | 7.917 | 0.671 | 0.537 | 1.060 | 0.943 |
| Raw | 143.638 | 75.663 | 4.570 | 5.170 | 3.404 | 3.209 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC17740 | 853 | 1e-23 | 751 - 807 | 100 | 57 / 57 | plus | ABC17740 |
| Harvest35 | U35_30827 | 422 | 3e-25 | 354 - 413 | 100 | 60 / 60 | plus |
Contig Sequence (422 bp)
>U35_30827 422 Hv_44K_v2 GGGGGCTGGCGCTGCTGGCGGGGATGGTGTCCGGGCTGGGCAACGCGTTCACGTTCATGG CCGGGCAGGCGGCCGGGTACGCGGCGGCGGACTCCGTGCAGGCGCTGCCGCTGGTGAGCA CGTTCTGGGGCGTGGTGCTGTTCGGGGAGTACCGGAGGTCGTCGAGGAGGACGTACACGC TGCTGGGGAGCATGCTCTTCATGTTCGTCGTCGCCATGTCCGTGCTCATGGCCTCCTCCG CGCACAGGAAGCCGCTCTGACGCAACCACTGCTGCTCATGCATGGCATGTAGCGACGGCA GAGGGGCTAGCAAGTTCTTCGATGAGGACGGATGTTGTGTAACTTGGACGAGTGCGATGC ATACCACACCTTATCGATGGTTTGAAATTCAGGCACCGTAATTAAGCAAAAAAAAAAAAA AA
Homology of Contig U35_30827 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |