barSeed - Barley Seed Development Database

Probe CUST_19827_PI390587928

Source Contig U35_30828

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19827_PI390587928	Hv_44K_v2	CATCGTCTCACCGAGTTTTGCGAGAATTCAGCGCAATCCACATGCAACATGTACAGAAAA	293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4171.1	4043	2e-24	100 - 159	100	60 / 60	plus	None
MLOC	MLOC_4172.2	928	2e-24	4 - 63	100	60 / 60	plus	None
MLOC	MLOC_4171.2	909	2e-24	15 - 74	100	60 / 60	plus	None
MLOC	MLOC_4172.1	964	2e-24	100 - 159	100	60 / 60	plus	None
JLOC1	JLOC1_2552.4	5349	8e-25	3891 - 3950	100	60 / 60	minus
JLOC1	JLOC1_2552.3	2270	8e-25	812 - 871	100	60 / 60	minus
Harvest21	ABC30909	356	3e-25	294 - 353	100	60 / 60	plus
Harvest35	U35_30828	356	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (356 bp)

>U35_30828 356 Hv_44K_v2
GTTCGCTCGGTTTTCTGTGGAGTGTTATATCTTCTGCCATGAAAGAAACCCTCCAAGTTG
CGCCTGTCGTGCTCCTCCATTACTCTCCCCCCACAAAGTTGCCTTAAACATATTTTTTGT
TGCTAATTGGTCTCCTTCATTTCGCATAGCAGATAACACAAGAAAGCAAGCAAGGCAAAT
ACCAAAAATTCAGTCGACTTAACAACACTGTTCACTTGCATATGTTGATATGTATGACAG
AGAAACCGAATATATATATTTATATATGGTTGAAAAGTAAACCCCTCTTGCTCCATCGTC
TCACCGAGTTTTGCGAGAATTCAGCGCAATCCACATGCAACATGTACAGAAAACAT

Homology of Contig U35_30828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None