barSeed - Barley Seed Development Database

Probe CUST_19822_PI390587928

Source Contig U35_691

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19822_PI390587928	Hv_44K_v2	AGATCATACATTATATTACTACTAGAGCGGCTATGTATGCGAATATTGCTTTTGGCTCCC	1128	GeneList: grey60 MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.279	5.977	1.438	0.659	0.203	0.209
Raw	3041.800	4196.725	834.548	641.068	64.477	74.798

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10228.1	813	8e-25	637 - 696	100	60 / 60	plus
Harvest21	ABC02200	1238	8e-21	1129 - 1180	100	52 / 52	plus	ABC02200
Harvest35	U35_691	1238	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1238 bp)

>U35_691 1238 Hv_44K_v2
GCTCGCTTTAATCCCTACAAGCCAGCCAGCTGCCTGCCCTGCCTCTGCCTGCTCCTCCCC
CACCCCCTTATCTTCCTCTCCCTTCTTGCTAGGAGTAGTACGCTTGGTGGTGGTGGTGGT
GCGTGTGTATGGTTGCTGCAGCATAGCTAGGGACAGGGAAGGTGGAGGAAGCAGCAGAGG
CGTCGGCCATGGGGAGGGGGAGGGTGGAGCTGAAGCGGATCGAGAACAAGATCAACCGCC
AGGTCACCTTCGCCAAGCGCAGGAACGGCCTGCTCAAGAAGGCCTACGAGCTCTCCGTGC
TATGCGACGCTGAGGTCGCGCTCATCGTCTTCTCCAACCGCGGCAAGCTCTACGAGTTCT
GCAGCACCCAGAGCATGACAAAGACACTGGACAAGTATCAAAAATGCAGTTATGCAGGAC
CTGAAACTACTGTGCAAAACAGAGAAAATGAGCAACTGAAAAACAGCCGCAATGAGTACC
TGAAACTAAAGACACGGGTTGATAATTTACAGCGAACACAAAGGAATTTGCTTGGTGAAG
ATCTTGATTCATTAGGCATAAAAGAGCTTGAGAGCCTTGAGAAGCAACTCGATTCGTCCT
TGAAGCACATTAGAACAACAAGGACACAACATATGGTTGACCAATTGACAGAACTCCAGA
GAAGGGAACAAATGTTTTCGGAGGCAAATAAATGTCTTCGAATAAAATTGGAGGAGAGCA
ACCAGGTTCATGGGCAGCAGCTCTGGGAGCACAACAACAACGTACTGAGCTATGAACGTC
AGCCGGAAGTGCAGCCGCAGATGCACGGCGGCAATGGATTCTTCCACCCCCTTGATGCTG
CTGGTGAACCCACTCTTCACATAGGGTACCCTCCTGAGTCCCTGAATAGCTCATGCATGA
CTACTTTCATGCCCCCGTGGTTGCCTTGATTGAAAACAGCTAGCGAAGAAAGTGTGAAAA
ATAAGTATATACGTGGCACCTGGCCGGCCGCATATATGCATGTATACCACTTCGAGTGAT
GGACTATTCCAGTCAAGATTCTCAGTTATTTTGCGTGCAACTTTCGTGTGATGAAAATTC
CAGAACCCTGTATTTGATGCTCAACGTTATTGTGTTATTGCGTGTAAAAGATCATACATT
ATATTACTACTAGAGCGGCTATGTATGCGAATATTGCTTTTGGCTCCCAAAAAAAAAAAA
AAAATTTAAATTTAAACTTTAAATTCAAAAAAAAAAAA

Homology of Contig U35_691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41950.2	250	4e-152	protein\|OsMADS7 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi3g41260.1	251	2e-170
Arabidopsis v10	AT1G24260.2	251	3e-86	\| Symbols: SEP3, AGL9 \| K-box region and MADS-box transcription factor family protein \| chr1:8593790-8595862 REVERSE LENGTH=251