barSeed - Barley Seed Development Database

Probe CUST_19819_PI390587928

Source Contig U35_16539

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19819_PI390587928	Hv_44K_v2	GTTTGCTCTCTATTTGTCTGATTTAACTGCGGTGTGATCGAAATAAAGATTGCAATAGTT	1494	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.885	1.949	1.117	0.855	0.338	0.428
Raw	7791.753	12448.533	6238.100	7624.117	1053.829	1450.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370765	1570	2e-24	1494 - 1553	100	60 / 60	plus	ABC08073
MLOC	AK374181	1739	2e-24	1680 - 1739	100	60 / 60	plus	ABC08073
JLOC1	JLOC1_24084.1	931	8e-25	696 - 755	100	60 / 60	plus
Harvest21	ABC08073	973	3e-25	880 - 939	100	60 / 60	plus	ABC08073
Harvest21	ABC46583	371	1e-23	56 - 115	98	59 / 60	minus
Harvest35	U35_16539	1619	3e-25	1495 - 1554	100	60 / 60	plus

Contig Sequence (1619 bp)

>U35_16539 1619 Hv_44K_v2
CAGTCTCCCACCCTCTGGCGTTCGGCGGCGGCGGTTGAACGGCGGCTGGCACTGTCGGAT
CTGCAGTTTTCTGAAGAATTGCGTCTGTCCGCTCTTGGTGCAGAGCGATCTGAGAATGGC
TTGGGGTCAGGCTGCTAGAAGGCCCATACTAGGGCTTCTGTCTCGTGCTCAACGACAAGC
TGCTCGAGGGTATACTTCTGCGACGTTCGAAACTCATCTGTCGAGCAATCATTTTGCACA
AAATGGCATGATCCGTAGGAGATTTAGCTCCGAGGTGCCTGCTTCGGAGCAAATGAATCT
TATTAGACAACTACGAGAAAGAACTTGTGCTCCGATCAAAGATGTCAAGGCTTCGCTAGT
TACTTGCAACTGGGATATTGAGGATGCACAGAAGGATCTAAGGAAAAGAGGGGTGATATC
TGCTGCCAAAAAGTCTTCAAGGACTGCCGCCGAAGGTTTGCTAGCTATGGCACAAGATGA
GACAAGGGCTGTTGTGGTTGAGCTAAACTGCGAGACCGACTTTGTTGCAAGAAATGACGT
GTTCCAGTATCTGGCTTCATCCTTGGCGAAGATGGCTTTGTCAGCACAGGCTCCTGGCAA
ATTGGTTTTCCCTTTTGCTCCTGCATATTTGGAGGACATGACTATTAATCTAGACCATCC
TAAACTCAGTGGTGAAACAACTGTTCGAAATGCTGTTACAGAAGTTGCTGCCATGGTTGG
GGAGAATGTAAAACTCAGAAGAGGTTTCATGTTGTCCACGACTGCACATGGCGTCGTTTC
ATCTTATCTGCATACCTGTCCTCAGCCAGGTTTGGGCCGCATTGCTGGATTGATTACATT
AGAAGCAGAAGATAGCAGTGCTTCCCTTGATGCTCTCAAGAGAGTTGGGTCGTCTATCGC
AATGCATATTGTTGCAGCAAAACCATTATTCTTATCAAAAGAACTGGTTTCTGCTGCAGC
TGTGGAAAATGAACGTGACGTGTTCCGAACTCAGGCCGAGAGTTCAGGTAAACCCCAAAT
GGCCATAGAGAAAATGGTGGAAGGCCGATTGAAGAAGTATTTTGAAGATGTTGTGCTTTT
GGAGCAAAAATACGTTGTTAATGATAGCACAAACATTAAGACTCTGCTGAGTGATTTGTC
AAAGGAGGTTGGTTCTAAAGTAACAATTGGCAATTTTATCAGACTGGAAGTTGGAGAAGG
AATTGAGAGACGCGAGGAAACAGCGAGGCCTGAAGCTACGGCTTGTGCTGCGTAAATGCG
AAGAGCTGAGATGAATCAAATGCCATGGTTCTTTTCTCCTGAGAATTTATACGGGTCCTC
ATCTTTTCTCCAAGGGGATGTTCTTTTCTGCAAATGTATAAATGCCCATCAATCAATTAG
CTAGTTGTTGGCAAATGAATTAAAAAGGAACCAGTAAATTGAAGCAAACTGAATAATGCA
CAACTGAAACGAAAGGCCACGCATATTGAGACCTGCAAGGCTGCCAATGTTGGGGTTTGC
TCTCTATTTGTCTGATTTAACTGCGGTGTGATCGAAATAAAGATTGCAATAGTTAAAAGA
AAATTTTGTGCAAAAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCACGCGAGACTAGT

Homology of Contig U35_16539 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g06900.1	373	0.0
Arabidopsis v10	AT4G11120.1	395	3e-140	translation elongation factor Ts (EF-Ts), putative \| chr4:6778066-6779934 FORWARD LENGTH=395