barSeed - Barley Seed Development Database

Probe CUST_19817_PI390587928

Source Contig U35_42802

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19817_PI390587928	Hv_44K_v2	CAGAAGCATTTGCAGTTCAACCTTTGCCTACTGTTCAACACAATATATCAGTAGCGCCTG	633	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371060	2389	2e-24	1635 - 1694	100	60 / 60	plus	ABC09447 ABC45584
MLOC	MLOC_6972.2	4933	2e-24	3248 - 3307	100	60 / 60	minus	ABC09447 ABC45584
MLOC	MLOC_6972.1	5328	2e-24	3627 - 3686	100	60 / 60	minus	ABC09447 ABC45584
MLOC	MLOC_6972.3	3735	2e-24	661 - 720	100	60 / 60	minus	ABC09447 ABC45584
MLOC	MLOC_6971.2	5487	2e-24	3638 - 3697	100	60 / 60	minus	ABC09447 ABC45584
JLOC1	JLOC1_4590.3	6064	8e-25	1973 - 2032	100	60 / 60	plus
JLOC1	JLOC1_4590.2	5710	8e-25	1619 - 1678	100	60 / 60	plus
JLOC1	JLOC1_4590.1	5719	8e-25	1628 - 1687	100	60 / 60	plus
JLOC1	JLOC1_4589.1	5490	8e-25	3668 - 3727	100	60 / 60	minus
Harvest21	ABC38710	696	3e-25	634 - 693	100	60 / 60	plus
Harvest35	U35_42802	696	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_42802 696 Hv_44K_v2
GGTTAGAGCAGGCGATGCAACTCCTCCAACCTCAATGGGTCATCTCAACAACTCCCCCAT
GCTTTGCCATGGAGCTGAGCTATGTGAAGAAATGTTGTTTCAAGACTCGATTGACAACTG
ATGATCCATTATGGAAGATATTCAGGGATCCTCTTCAAAAGTCAGTATCCTCGCCCCCAT
CGGTGCTTGCTTCTTGCACGCCGCCAGATGAAGATCCCTCAACTTTTGTTGAGGATGATC
ATCCAACTTCTGTCAGTGAAGAATGCACAGATTTTGATGTCAGCACACTTGAACTGCAAT
TTGTGCCATCCCCTCCGGTTGAAGAACCAGATATTACATTGTTTGGAAGAGCAAGATTTG
GTTCTCAAGTGATTGACATAATGAAAGAAGAGTTATGCCACCAGTACTTTGCTGCAGCTG
AACAAACCAAATTATGTGTACCGGAAGATTTGCCTCATGATAGCAGCCAAAATGTTGAAA
CATATTCTGGTATGGATTTGATCACAAAGCAAGCCCCAGCTTCCCTACAAGACTGTGCGG
AAGCTGGAGATGTGCCCCCCTCCTGTCAGTGTGCCGAAGCTAGAGATGTGCCCCCCTCCT
GTCAGTGTAAAGCATCCCCAACCCTACCAGTACCAGAAGCATTTGCAGTTCAACCTTTGC
CTACTGTTCAACACAATATATCAGTAGCGCCTGATC

Homology of Contig U35_42802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65890.1	699	2e-70	protein\|DNA repair metallo-beta-lactamase, putative, expressed
Brachypodium v1_2	Bradi2g56900.1	623	2e-99
Arabidopsis v10	None