barSeed - Barley Seed Development Database

Probe CUST_19816_PI390587928

Source Contig U35_694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19816_PI390587928	Hv_44K_v2	GATGATATCCGTTGCTCCTGGGTGTTGTTTCTGTGAATTAACCTATCGAATATGAGCGTT	1133	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.031	1.517	0.993	1.371	0.781	0.797
Raw	1483.377	3650.730	1974.317	4360.120	847.844	952.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1852.1	682	7e-23	41 - 100	98	59 / 60	minus	ABC49647
JLOC1	JLOC1_1125.1	693	4e-23	577 - 636	98	59 / 60	plus
Harvest21	ABC02203	1196	3e-25	1134 - 1193	100	60 / 60	plus
Harvest21	ABC02195	1250	1e-23	66 - 125	98	59 / 60	minus
Harvest35	U35_694	1196	3e-25	1134 - 1193	100	60 / 60	plus
Harvest35	U35_687	1250	1e-23	1126 - 1185	98	59 / 60	plus

Contig Sequence (1196 bp)

>U35_694 1196 Hv_44K_v2
GCCCCTCTCCCCTCCCACTTCACCCAACCACCTGACAGCCATGGCTCCGCCACCTCGCCT
CCGCCCGCGCCTCTCGGAGTAGCCGTCGCGGTCGCTCGCTCGCTCGCTGCTGCCGGTGTT
GGCCCGGTCCTCGAGCGGAGATGGGGCGAGGGAAGGTGCAGCTGAAGCGGATCGAGAACA
AGATCAACCGCCAGGTCACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACG
AGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGC
TCTACGAGTTCTCAACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACT
CTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACG
AATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTCATGG
GAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAA
GCTCACTGAAACATATCAGAGCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGC
TTCAGAAGAAGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTTGTGG
AGAAGCAGAAGGCCCAGGCGGCGCAGCAAGATCAAACTCAGCCTCAAACCAGCTCTTCTT
CTTCTTCCTTCATGATGAGGGATGCTCCCCCTGTCGCAGATACCAGCAATCACCCAGCGG
CGGCAGGCGAGAGGGCAGAGGATGTGGCAGTGCAGCCTCAGGTCCCACTCCGGACGGCGC
TTCCACTGTGGATGGTGAGCCACATCAACGGCTGAAGGGCTTCCAGCCCATGTAAGCGTA
CTATTCAGTACGAGTAACAAGTTGCAGCGGCCAGCCTGGTGTATCATGCGGTTGCGAACA
TGCTAACCCCATGGAGGGGAGAGGAAAAGAAATCAGAGTAAAGCAGCAAGCTGCAGGAAT
GTGTATATTTCACTTCGTCCACCTCAGTTTCCTTTCCACCTGGGCTGAGATGGCTGTACG
AGTAATCTACCATGTAATTTATATGTAGCATGAGTGACGAATTTTCAACTTTCGATGATA
TCCGTTGCTCCTGGGTGTTGTTTCTGTGAATTAACCTATCGAATATGAGCGTTGTG

Homology of Contig U35_694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54160.2	247	1e-108	protein\|OsMADS14 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi1g08340.1	244	7e-113
Arabidopsis v10	AT1G69120.1	256	1e-72	\| Symbols: AP1, AGL7 \| K-box region and MADS-box transcription factor family protein \| chr1:25982576-25986102 REVERSE LENGTH=256