- Probe CUST_1980_PI390587928
- Source Contig U35_46768
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1980_PI390587928 | Hv_44K_v2 | TCTTAAACATAGACGGTGGACATCTCCCCTTTTCTTTTTGGGAGTAGTAAGAGCAAAAAA | 11 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.714 | 0.778 | 1.187 | 1.752 | 1.074 | 1.281 |
| Raw | 133.654 | 232.258 | 307.804 | 685.794 | 156.712 | 199.198 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47294 | 161 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC47294 |
| Harvest35 | U35_46768 | 161 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (161 bp)
>U35_46768 161 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCTCTTACTACTCCCAAAAAGAAAAGGGGAGATGTCCACCGTC TATGTTTAAGAAAATACATATCAATTATACACAATGACATGATAAAAATGAGTGGAAATA TGTTCTAAAAAATCCCGATAATGGATTTCACTCAGTAATGA
Homology of Contig U35_46768 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |