barSeed - Barley Seed Development Database

Probe CUST_19792_PI390587928

Source Contig U35_16540

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19792_PI390587928	Hv_44K_v2	GAAAAAGTTATTTTTCGTTTTTCTTTTTCTGCTCCTGGCTCAACCCCTTACGAAACCCTA	21	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374181	1739	2e-24	101 - 160	100	60 / 60	plus	ABC08073
MLOC	MLOC_19612.1	725	2e-24	581 - 640	100	60 / 60	minus	None
MLOC	MLOC_19612.2	688	2e-24	544 - 603	100	60 / 60	minus	None
JLOC1	JLOC1_13589.2	727	8e-25	86 - 145	100	60 / 60	plus
JLOC1	JLOC1_13589.1	690	8e-25	86 - 145	100	60 / 60	plus
Harvest35	U35_16540	542	3e-25	22 - 81	100	60 / 60	plus

Contig Sequence (542 bp)

>U35_16540 542 Hv_44K_v2
ATCCATCCTCCATCCAGTAAAGAAAAAGTTATTTTTCGTTTTTCTTTTTCTGCTCCTGGC
TCAACCCCTTACGAAACCCTACTGCGCGCACCCTCCTCCCGGCTCCCAGTCTCCCACCCT
CTGGCGTTCGGCGGCGGCGGTTGAACGGCGGCTGGCACTGTCGGATCTGCAGAGCGATCT
GAGAATGGCTTGGGGTCAGGCTGCTAGAAGGCCCATACTAGGGCTTCTGTCTCGTGCTCA
ACGACAAGCTGCTCGAGGGTATACTTCTGCGACGTTCGAAACTCATCTGTCGAGCAATCA
TTTTGCACAAAATGGCATGATCCGTAGGAGATCTAGCTCCGAGGTGCCTGCTTCGGAGCA
AATGAATCTTATTAGACAACTACGAGAAAGAACTTGTGCTCCGATCAAAGATGTCAAGGC
TTCGCTAGTTACTTGCAACTGGGATATTGAGGATGCACAGAAGGATCTAAGGAAAAGAGG
GGTGATATCTGCTGCCAAAAAGTCTTCAAGGACTGCCGCCGAAGGCTTGCTAGCTATGGC
AC

Homology of Contig U35_16540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g06900.1	373	1e-51
Arabidopsis v10	None