barSeed - Barley Seed Development Database

Probe CUST_19776_PI390587928

Source Contig U35_16549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19776_PI390587928	Hv_44K_v2	TATGTATTCATGAAGCAGATATATAGATGACCCTTTTCCTGTGAGCGGCCGCTGGCACTT	662	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.862	4.911	1.205	0.738	0.892	0.795
Raw	45.931	64.084	12.530	12.156	2.953	3.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16549	1073	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_16549 1073 Hv_44K_v2
GCTGATGAAAGATGCCCGAGGGATTGTGTCACTGAGTGGAATGGTGCCTCCATTTGTGCC
GTTCGCTCAAACATTTGCCGCCGCCATCACCGCCGCGCTCACGGGTTCCCTCTACTACAT
CGCTACCGCTCCCAAAGACCCTACCTATGTGGTGACACCAGTCATGCGCTCGCACGCCGG
GCGACAGAACATGAAGAAACTGTTTTCAGCTTGGTACGAACGGAGGCAGATGAGGAAGAT
ATACTCACCACTCCTGGAAGGCATCCTGGCTTTCTACCTCGGCTTCGAATGGATCCAGAC
GGGCAACATCCTGGCACCGATGATCACCCACGGGATATACTCCGCGGTGGTCCTTGGCCA
TGGGCTGTGGAAAATCCAAGACCACAGGAGAAGGTTGCGACAAAGGGTCCAGGAAATTAG
ACAAAGCTCAGACGACGAGCTCTAGTCACCCAATATTCTAAGCAGCTAGGGACCAAGTTT
TGATACAGCTAGCCTACGATAAACTACCCTAGTAGATAGAGATGAGACCGTGGTAGTACA
GGACAAGATGTACATATGCAGGCAGGATGGCATCATGTCAATATACAGTGTATACATAGT
ACTTATATAAGTGTGTTAGTGTATATGTAGAAACTACCCAACTGTATCGTTTTCAATGTA
TGTATGTATTCATGAAGCAGATATATAGATGACCCTTTTCCTGTGAGCGGCCGCTGGCAC
TTGCTTTGTCTGAGCAACAGCACAGGGAGAGAGAGCTTACTGCTTCTTCTTACATAGTGG
ATCACATGATGGTGATGCATGCTAAGCTTAAGAACCATCATCACTTGGCACACACACACC
AGTTGAGATTACACATGATGATTGATTAGGCGCGGTAACTAATTAATTAACCCCAGCCGC
TAGCTAGCTAGCTTTTCTAGTTAGGTGCAGTAAAAACTCCACGGCCCTCCAAATCTTCAG
AACGTAATTAACCTGAAACACCAGAAGCATCAGGGAAAAAAGATGGATGGATGATCTTTC
TTGCTGCGCTCGCTCGCTCGGTCTTGTGCTGGCTGCTGTCGTCTGCCATGCCA

Homology of Contig U35_16549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	ChrSy.fgenesh.mRNA.82	381	3e-63	protein\|expressed protein
Brachypodium v1_2	Bradi1g78710.1	367	9e-67
Arabidopsis v10	AT4G17840.1	422	1e-52	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:9918222-9920190 REVERSE LENGTH=422