barSeed - Barley Seed Development Database

Probe CUST_19771_PI390587928

Source Contig U35_28521

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19771_PI390587928	Hv_44K_v2	GCGTATGATACTTTATCTGTTTTAGTTTCACCCATTTTGTATTTGTGTGTGTGAGCAGAT	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18503.4	959	2e-24	508 - 567	100	60 / 60	minus	ABC07115
MLOC	MLOC_18503.1	1105	2e-24	636 - 695	100	60 / 60	minus	ABC07115
MLOC	MLOC_18502.1	447	9e-22	1 - 55	100	55 / 55	minus	None
JLOC1	JLOC1_12805.1	1580	8e-25	994 - 1053	100	60 / 60	plus
Harvest21	ABC27460	583	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_28521	583	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_28521 583 Hv_44K_v2
CACTCCTCTTCTACCGCTTAATGGACTTGCGTTTTCCATTGGTAGATCCATTTACCTAGT
TTAGCAAAAATTTGCAGTATCAGGTTCAAACATTTATGCAGTAACGCCTATAATCTGAAT
CGATATTGTGCCATTGCTGGAGAAAAAATATCCCACATTTTCTGAGAAAACCGCTGCAAT
ATACAAAGTTTGTCTGCAATAATCTTGACAAAAAGAAAAACAGACCGGCTTTCTTTAAAG
TTACATCTGCTTCATTTTGAGATAGTTTTTGCAACATTTGAAAATTACTACATGCGTCCA
TGAACTCGCATATCGGCTTTCGCTACATGCTGCTGATCAAGTGGGTTTAATAATCGGCGA
ATGAGCTGTCAACTATCAGATAACTTCAGTATGTCAGGCGTATGATACTTTATCTGTTTT
AGTTTCACCCATTTTGTATTTGTGTGTGTGAGCAGATTTTTGCAACCTTCTGGTCTAGCT
GAAACACTCTGTGGTTCACCCCTTTACATGGCTCCAGAAGTCATGCAAGCTCAGAAGTAT
GATGCAAAGGCAGATCTTTGGAGCGTTGGTATTATCTTGTATC

Homology of Contig U35_28521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None