barSeed - Barley Seed Development Database

Probe CUST_19770_PI390587928

Source Contig U35_28522

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19770_PI390587928	Hv_44K_v2	TGTTAGGAACGCCGTTTCCTGGAACGCCCTAGTGGGTGCACACGATGTGGCAGGTGATTT	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16447.1	2478	2e-24	1836 - 1895	100	60 / 60	minus	None
JLOC1	JLOC1_11321.1	977	8e-25	878 - 937	100	60 / 60	minus
Harvest21	ABC27462	631	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_28522	631	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_28522 631 Hv_44K_v2
GTGGAGATGCTCTCACAACTTCCTGCGCTCGACGGTTCCCGGCTCAAACACGCCGGCCGG
CGCCGTGCGTTGCCTCCCTCCTCGGAGCGCCGCCGCAGGCAACCAGCTCCACGCGCTCCT
CACCAAGCATGGCACCCCTCCACCACCCGGCCTTCCTCCGCGCCCTCCTCTCCCGACTCC
CTGCTTCCCCGTCGTCCCTCGCCCTCCTACTCTCCGCCCCTCCGCGTGTTCTCTCCCCGT
GCCTCTTGTGCCCGGCCATCGACGAATTCTCCTCCTCCTCCTGCGTTCCCTACTTCTCGC
TCGTCATCTTCAACCACGTCTGCTGCCTCTCCCTCCCCACTCCGCTCCCCACGTTCCCCG
CCCTCCTCAAATCCTGCGCCCGCGCTTTCAAGCTGCGCTCTGGAACCAGCTCGTCCTCCG
CGGCCTGCGCCTTGAAGGGGCTGGAGCTGCACTGCCGCGTCCTAAAGCTGGGCTGCGCTG
CGGATCGCTACGTGCAGAACGCGCTCGTGTCCATGTATGGTAAACTCCGCCGTCTCAGGG
AGGCGAGGACGGTGTTCGACGAAATGCCTGTTAGGAACGCCGTTTCCTGGAACGCCCTAG
TGGGTGCACACGATGTGGCAGGTGATTTGCA

Homology of Contig U35_28522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None