barSeed - Barley Seed Development Database

Probe CUST_19754_PI390587928

Source Contig U35_16552

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19754_PI390587928	Hv_44K_v2	GCCTGGTATCATAAGTTGTCGACAATTTTATCACTAGTGTGTCTGTGTCTGTTATCGGAG	398	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75034.7	1451	2e-24	1162 - 1221	100	60 / 60	plus	ABC05690
MLOC	MLOC_75034.1	4589	2e-24	3043 - 3102	100	60 / 60	plus	ABC05690
MLOC	MLOC_75034.5	2034	2e-24	1407 - 1466	100	60 / 60	plus	ABC05690
MLOC	MLOC_75034.6	2279	2e-24	1652 - 1711	100	60 / 60	plus	ABC05690
MLOC	MLOC_75033.16	1879	2e-24	426 - 485	100	60 / 60	plus	ABC05690
MLOC	MLOC_75033.13	4954	2e-24	3408 - 3467	100	60 / 60	plus	ABC05690
JLOC1	JLOC1_50031.5	2450	8e-25	894 - 953	100	60 / 60	minus
Harvest21	ABC05690	565	3e-25	361 - 420	100	60 / 60	plus	ABC05690
Harvest35	U35_16552	600	3e-25	399 - 458	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_16552 600 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGGGAGTCGGACCCTAATCGAATCAATCCCTTCCATCCAGT
CCAGATCAAAACAAGGGAGAGGGCATGGCGTCGTCCTCTGCTGTGAGCAAGCGCGGCGAC
GCGGGCGGCGTCCTGGCTGCGATCTCGCGGTCTTCGGTGGCGGCGCACGGCCGCGAGGCC
GCGGCGGTGGCGGGGAAGCTGCTGCGGAGTACGGGGAAGGCGGCGTGGATCGCGGGGACC
ACCTTCCTGGTGCTCGTCGTGCCGCTCATCATCGAGATGGACCGCGAGCAGCAGATGGTC
GACCTCGACCTCCAGCAGCAGGCTCTTCTGGGCTCGCCGCCGACCCTCGCCAAATAAATC
TCTCCTCTTGTTCGCTTCCGTCCTTCACATTTCATTTTGCCTGGTATCATAAGTTGTCGA
CAATTTTATCACTAGTGTGTCTGTGTCTGTTATCGGAGAGAAAGATCATGCCTTGTTGTT
GTGACTGTGACTGCTCCTTCTCCTGCTCGGTACAATTATCGCAATATCACCAGCTTGTCT
TGAAAAAAAAAAAAAAAAAATTTGTTTATGATTGCCTATTTAGATACGTAAAAAAAAAAA

Homology of Contig U35_16552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None