barSeed - Barley Seed Development Database

Probe CUST_19751_PI390587928

Source Contig U35_30847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19751_PI390587928	Hv_44K_v2	CAAAAGATATTTACGAATTTACAGAATGCCCAAATTGCTACGGCCGCGGGAAGCTGGTCT	467	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371822	989	2e-24	502 - 561	100	60 / 60	plus	ABC12089
MLOC	AK368681	965	2e-24	520 - 579	100	60 / 60	plus	ABC12089
Harvest21	ABC30947	651	3e-25	468 - 527	100	60 / 60	plus
Harvest21	ABC12089	891	3e-25	482 - 541	100	60 / 60	plus	ABC12089
Harvest35	U35_30847	651	3e-25	468 - 527	100	60 / 60	plus
Harvest35	U35_5450	912	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_30847 651 Hv_44K_v2
CGGTGGGGAGAAGCGAGCGGAAGGGAGAGCCACGACGATGGCGGGCGTCAGCTGCCGCCT
CCTCAACTCGCCGGCGCCAACGAGGCCTCTGAGCTCCCGCCCGAGCGTCCCCGCCGTCGG
TGGCTGCGCCGCTTCCCACCGGCCGCCGGCCAGAGTGCGAACTCGGATCAGTTGCTGCTC
CAAACCCAACAATTCGGAGAAAGAACCCGCAAGAAGCGAGCCTCCCAGCGATGCCAAGGA
TGAAGAAAATATTAGCTCCAGACGACGATGTCTAGCTTGCCTGTGTGCTGCAACATTAAT
CAGTGCATCTGGCCCAACGTTTTATGCGTCAAAAGGATTTGCTGCGGATATGACGAACAA
GCCTGGCATACAAAAAGCTGTGTGCAGAAATTGTGGTGGTGGTGGCGCTATAATATGTGA
CATGTGTGGTGGCACAGGAAAATGGAAGGCTCTCAACCGAAAGCGAGCAAAAGATATTTA
CGAATTTACAGAATGCCCAAATTGCTACGGCCGCGGGAAGCTGGTCTGCCCGATTTGTCT
CGGAACCGGCGTGCCCAACAACAAAGGACTCCTGCGGCGACCTGGCGCCAAAGAGCTGCT
GGGACAGATGTACAAATGGCAGCTATTGCCCAGCTCGTAGATACATAGCGT

Homology of Contig U35_30847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g36140.1	188	6e-81	protein\|expressed protein
Brachypodium v1_2	Bradi3g37770.1	193	1e-84
Arabidopsis v10	AT2G34860.1	186	1e-62	\| Symbols: EDA3 \| DnaJ/Hsp40 cysteine-rich domain superfamily protein \| chr2:14708380-14709804 FORWARD LENGTH=186