barSeed - Barley Seed Development Database

Probe CUST_19748_PI390587928

Source Contig U35_16555

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19748_PI390587928	Hv_44K_v2	TTCCTCTTATGCTTGTAGCCAGGGTATTTGTTTTTGAAAATCGGGTTTGCCTTTAAAAAA	2234	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.871	1.392	1.124	0.946	0.384	0.376
Raw	8629.870	9874.753	7182.790	9336.613	1363.106	1446.474

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05736	2305	3e-25	2235 - 2294	100	60 / 60	plus	ABC05736
Harvest35	U35_16555	2305	3e-25	2235 - 2294	100	60 / 60	plus

Contig Sequence (2305 bp)

>U35_16555 2305 Hv_44K_v2
GCCCATCCGTCTCCCTCTCCTCCCCCCTCGTCGAAACCCTAGGATCCGGCGCGCCATGGC
GGACGGCGCGGACGGCCTGGCCGAGAGGCTCGCGGGGGCGGAGATCGCCGCGGACGGCGG
CGGCGGCGAGGAGGAGCCGAAGCTCTCGAAGAACGCCCAGAAGAAAGAGGAGAAGAGGAA
GAAGCAGGAGGAGCAGCGCCGGCTCAAGGAGGAAGAGAAGAAGAACAAGGCGGCGGCTGC
TGCGGCTTCGGCCGGTGGAGCGCCCCAGCAGGCGGCTGCGGCCGATGACGAGGACATGGA
TCCTACTCAATATTACGAGAACAGGCTCAAGACCCTTGACACACTGAAGGCTGCTGGTGC
TAACCCCTATCCGCATAAGTTCCTAGCTAGCATCTCCGTCCCTGGATACATTGAGAAATA
CAAGGGCCTTAATGAGGGGGAGAAGCTTGCTGATGTTACAGAGTGTCTAGCAGGGAGGAT
CATGAACAAGAGAACATCATCTTCTAAGCTCTTATTTTACGATCTTTATGGTGATGGCGT
GAAGGTTCAAGTAATGGCTGATGCCAGGACCTCGGAATTGGAAGATGCTGAATTCTCTAG
TTTCCATTCTGGTGTGAAGCGAGGTGATATTGTTGGTATATGCGGAATTCCAGGAAAAAG
CAATAGAGGGGAGCTAAGTGTATTCCCACGGAAATTTGTTGTGCTCTCTCCTTGTCTTCA
CATGATGCCCCGGCAGAAGAATGAAGCAAGTGCGGTACATACACCATGGATCCCAGGAAT
GTGTAGGAATATCGAGAAGTATGTTTTGAGGGACCAGGAAACTCGTTATCGTCAACGATA
CCTTGATCTTATGGTAAACCATGAAGTGAGACATATCTTCAAGACCCGATCAAAAATTGT
CTCGTTTATTCGAAGGTTTCTTGATGGCCTTGATTTCTTGGAGGTGGAGACTCCAATGAT
GAACATGATTGCTGGTGGAGCCGCTGCAAGGCCTTTTGTCACACACCATAATGATCTAAA
CATGAAGCTTTATATGCGTATTGCACCTGAGCTTTATCTGAAGGAATTGGTTGTTGGTGG
ATTGGACCGTGTCTATGAAATTGGGAAGCAGTTCAGGAATGAAGGGATTGATTTAACACA
CAATCCTGAATTCACAACAGTTGAGTTTTATATGGCTTATGCAGATTACAATGACTTGAT
GGAGCTTACTGAAGCCATGATATCTGGTATGGTTAAGGAGCTGACAGGTGGGTATAAGAT
CAAATATCATGCCAATGGAGTTGATAATCCACCGATAGAGATTGATTTCACACCTCCCTT
TAGAAGGATAGACATGATCGAAGGATTGGAAGCTATGGCCAAACTGGAGATACCGAAAGA
TATTTCCAGTGATGAAACAAACAAGTATCTGATAGATGCATGTGCTAAGTATGATGTTAA
ATGTCCACCTCCCCAGACAACAACACGGTTGCTTGACAAGCTAGTGGGCCATTTCTTGGA
GGAGACATGTGTGAACCCAACATTTATTATCAACCACCCAGAGATAATGAGTCCATTGGC
AAAGTGGCATAGGTCCCGACCTGGTTTGACAGAAAGGTTTGAGCTCTTTGTTAACAAACA
TGAGGTGTGCAATGCCTACACAGAGTTGAACGATCCTGTCGTGCAAAGGCAACGGTTTGA
GGAACAACTGAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCTTTGGATGAAACATT
CTGCACTGCCCTCGAGTATGGACTGCCACCAACAGGTGGTTGGGGTTTGGGAATTGATCG
CCTTACAATGATGCTGACAGATTCCCAGAACATCAAGGAAGTTCTCCTGTTCCCGGCCAT
GAAGCCCCAAGAGTAGCTGTTTGCAAAGATGAAACCCATCAACTGAAGGTACTTGACAAT
ACAGGGAGTTTTAATTGCACTGGACAGAACATGTGTAGCAGCACTGGAGGTACAAGTCAG
CTACTTGTGCGATCGAAGGGCTGTTGAAATTTTGAGCTCTGGATAGGACGAACAGTGAGG
CATATGAAGGGAACATTCATCGGAGGAGCCGAAGTGTGCTGCATGTTTGTTTGTTTTTCT
GTTTGAAAATTGAAAAAGCAAAATTAGGACTTGGTATTGTTATACACTTCCTCAGATCTC
GTCGTAACAGTAACAGTTGCATTGCTTTCTTATTGTATGGAGATGGACAACACCAGATGT
AGAGCTGCTGCCTCTTCCTCTTATGCTTGTAGCCAGGGTATTTGTTTTTGAAAATCGGGT
TTGCCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g38980.1	603	protein\|tRNA synthetases class II domain containing protein, expressed
Brachypodium v1_2	Bradi1g15370.2	599
Arabidopsis v10	AT3G11710.1	626	\| Symbols: ATKRS-1 \| lysyl-tRNA synthetase 1 \| chr3:3702359-3705613 REVERSE LENGTH=626