barSeed - Barley Seed Development Database

Probe CUST_19737_PI390587928

Source Contig U35_26775

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19737_PI390587928	Hv_44K_v2	GCGTCTACTTTTGTGAAATTTATTGAATTGGTTGTAGCGGAAGGTGATAAGAGAGAAAAT	1076	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.704	1.215	1.145	0.680	0.534	0.463
Raw	173.013	169.870	156.796	131.527	39.785	39.120

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58146.1	1214	2e-24	1021 - 1080	100	60 / 60	minus	None
JLOC1	JLOC1_37748.1	1325	8e-25	125 - 184	100	60 / 60	plus
Harvest21	ABC26043	1139	3e-25	1077 - 1136	100	60 / 60	plus
Harvest35	U35_26775	1139	3e-25	1077 - 1136	100	60 / 60	plus

Contig Sequence (1139 bp)

>U35_26775 1139 Hv_44K_v2
GTGCTGGTGGAAATACAGTGCTTGATGATTTGTTTATATTTTTCATCACATCACCTGACA
ACAATATCTTTCAGAAGCACCTACAGTATCTGGTGGCTAACTGCACAGGAGCACCTATTC
AATTTATCTCAAAGTACCTTGTGGATGAAGGTTTGTCTGCTGGAGTTCAAGCAGAGAGTA
TTCTTGTGCTCGCTTCAATTTGTTCAACGTGTGCTTTATCTGAAAGTAGTATGGATGAGA
GCTTGTGTATGCAGCTTCTACTTTTGTTCCCTTCCCTTATTGTCCCTCTTTCCCATGAAA
ATAAGGATGTAAGGTCCTCTGCTATGAAATTTATCGAGGGCCTGTCTTTGGTGTGGCAGC
GCTTGAGCACTTCGGTGCCCAAAAATGGAAACAACGGCAAATTCCCCATGTCATCTCCAG
CCTTTGGTGTTTTCCTCGAGTCGTTGGCCAACCAAAAGGCCATGATATCCTCAGATGCGA
GATTTTTACCTGCTTATATTTCATCAATGCTTAGCCCAAGTCAAGATCTGATGGTTCCTG
AAAATCTTCATGAAAGAATTGATCAGCCGGCAAAAGATGCTATCCTTGATTTCATCTTGC
ACTCTTCTTTGAAGCTCTCTCCTTATGGAAAGCTGATGGTTCTGTCAGCACTGAAAGGAG
TAGGAAGCATCTTATTTAAGGGAGAAGATGTTAAGTCTTTGTTCTTGTATCTTCTGGACC
GTCGTAGTCAGCATCAAAGTGGGCATGATTCTAAGCAGATCGTGACTACTCATGAAACGC
AAATATTGTGCTTGCTTTTGGAGGTTTTGTTCGCAGTGGCAGATCAAACAAATTTTGGTT
TTGACACATCTGAGGCTCTATTGAAAGCTTTAAAGGTTGATGGTTTGTCTCACGAAGATC
CTGTTTCCGTGATGCCATGTCTAACTGCCCTGCAAAATCTTCAACCAGTATTCTTTGAAA
ATTTGAAGAACGATACTAAGGATAAAGTATTTGGGCTACTTATTTCTCTGTTTCGAGCTG
AGAATTTGGAAATTCGAAATGCAACACGAGATGCTCTACTACGGATTAATGTTCATGCGT
CTACTTTTGTGAAATTTATTGAATTGGTTGTAGCGGAAGGTGATAAGAGAGAAAATTCA

Homology of Contig U35_26775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46310.1	2143	5e-154	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi5g17540.1	2189	4e-178
Arabidopsis v10	None