barSeed - Barley Seed Development Database

Probe CUST_19720_PI390587928

Source Contig U35_26786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19720_PI390587928	Hv_44K_v2	AGTACATTGCTTGGGAGATTGATTGACTTGGGTAATGAGGATCAAACTAAAGGCAATGTA	601	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.744	1.289	1.257	1.052	0.665	0.839
Raw	64.071	57.961	63.730	75.535	18.382	25.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251534.1	2440	2e-24	874 - 933	100	60 / 60	plus	ABC10566 ABC10567
MLOC	MLOC_11582.1	1147	2e-24	61 - 120	100	60 / 60	minus	None
JLOC1	JLOC1_7682.1	1219	8e-25	930 - 989	100	60 / 60	plus
Harvest21	ABC25467	661	3e-25	602 - 661	100	60 / 60	plus
Harvest35	U35_26786	661	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_26786 661 Hv_44K_v2
TCGTTACCAGCCACAGCTTTAGAAGAACGATGCATCTTGTGGGCCTATTCTTTCTCAATG
GACCGGCGGAAATTTGTTGAATTGGAAGAGTTACTGATCTGATAACATGTCACTCCGACT
TCCACTTCCGCAAGGCCTCTCCTTTTTCAAAAGTGTTGGGTGGTTTGAAGACAGTAAGGT
TGATTCAGCTGCCAAGCACCACTTGTCTCCAAAATTTAAGCTCCAGACAGATAAGGAGGT
GTATAGACCTGGTGATTCAGTTACCGCGACAATAGAAATCTCTAGTCCCTCTAGTTTAAA
GGATGAAGCGGGGACAGCGTCAGGTGGAGATGTCACATCTCTCTTGGTAGATGGGCTATC
TTTCGAACTTAAAGGAATTGAGAAGTTGGATAGCCAATGGTTCTCTGTTCCAAAGCCCTT
ACCAGGGTCTAAGCAAAGGAGAGGTGAATATTTGTTTTTGGATTGTTCGGCACCCTCATT
AGTCTCCAAAGTAATAATTGCTTCGGGGCAAACAAAAACATATATTGTACGTTTGGAGCT
CCCAAAGATTTTACCACCATCATATAGGGGCATCAGTATTCGCTATATTTATTATGTTAG
GAGTACATTGCTTGGGAGATTGATTGACTTGGGTAATGAGGATCAAACTAAAGGCAATGT
A

Homology of Contig U35_26786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41440.2	552	3e-77	protein\|expressed protein
Brachypodium v1_2	Bradi1g35900.4	514	9e-92
Arabidopsis v10	None