barSeed - Barley Seed Development Database

Probe CUST_19713_PI390587928

Source Contig U35_38763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19713_PI390587928	Hv_44K_v2	CGTTTACTGTATTTGACTGTGTATTTGATTGTTCTCTCTAGCAATTGTGTTTGTGAGTTC	18	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.125	2.252	2.182	0.759	0.226	0.201
Raw	66.026	116.113	92.934	53.160	3.511	3.331

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_38763	715	3e-25	19 - 78	100	60 / 60	minus

Contig Sequence (715 bp)

>U35_38763 715 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGAACTCACAAACACAATTGCTAGAGAGAACAATCAAATACAC
AGTCAAATACAGTAAACGAAAGCAAGATGTAGCACAAAAGCAAAGCACGGGACAGTAAAA
AAGATCCACCAGCTGACGACAGATATATATGATCTAAAGTTTAACATCTGTTACATCACC
ACAACCATCATCAAACATAGTCTCAGGTAGCACCACATACAAACAGCAAGATACACATGG
GGAGAAAATAATGCGGCTCCCTTCACAGCAAGGGCAAGTAGCAAAACATTACCCAAAATT
TAGAGCTTGTCCTCGAAATCGGATAGGGGAGTCATCTGCTCCTTGAGACCCTTCCTCTTG
CGGATCTCCGTCACAAGCGTCGCAGACTGGGTGCCAGGGTCCAAAGGATCAGAAGCCATG
ATGTCCCAGTGATCAAACACACACTGGGGGAAGGCCTGGCCGGACGTCGCAGCCCTGAGG
GTGCTCGAGAACCCGAAGGACTCGATGACAGGCAGGTAGGCCTTGATGTTGTAGAGTGGA
GTACCTTGCCTCTGCATCTCCTCAAACACGTGTCCTCTCTTCTGATTCAGCACACCATAG
ATACCACCAAGCGCATTCTCCGGCGCCTGGATCTCAACCAGGTACACGGGCTCCAGCAGC
CTTGGCTTGGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTTGCCGTTGGGATGA

Homology of Contig U35_38763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32030.1	844	1e-77	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844	2e-81
Arabidopsis v10	AT1G56070.1	843	7e-75	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843