- Probe CUST_19712_PI390587928
- Source Contig U35_38764
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19712_PI390587928 | Hv_44K_v2 | CAGCGCTATGATTTCAGGGATCAACAGTATAATTGGAAGTACGATATTCTTACATTTGAT | 562 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.382 | 1.160 | 1.242 | 0.982 | 0.421 | 0.452 |
| Raw | 23.374 | 27.875 | 27.422 | 32.567 | 3.673 | 5.466 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58041.11 | 1399 | 2e-24 | 446 - 505 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.6 | 2014 | 2e-24 | 754 - 813 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.7 | 2119 | 2e-24 | 859 - 918 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.8 | 1567 | 2e-24 | 670 - 729 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.9 | 1755 | 2e-24 | 858 - 917 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.1 | 1899 | 2e-24 | 936 - 995 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.3 | 1649 | 2e-24 | 753 - 812 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.4 | 1534 | 2e-24 | 638 - 697 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.2 | 1896 | 2e-24 | 933 - 992 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.5 | 1817 | 2e-24 | 646 - 705 | 100 | 60 / 60 | plus | ABC09141 ABC45334 |
| MLOC | MLOC_58041.10 | 1651 | 7e-23 | 753 - 813 | 98 | 60 / 61 | plus | ABC09141 ABC45334 |
| JLOC1 | JLOC1_37681.2 | 1617 | 8e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37681.1 | 1663 | 8e-25 | 647 - 706 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09141 | 1487 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | ABC09141 |
| Harvest21 | ABC09142 | 673 | 4e-24 | 616 - 673 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_38764 | 653 | 3e-25 | 563 - 622 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17257 | 1597 | 3e-25 | 616 - 675 | 100 | 60 / 60 | plus |
Contig Sequence (653 bp)
>U35_38764 653 Hv_44K_v2 GGAAAAATGCAGGGTGGAAGCTACACCATGTCCAATCCAAATCCAATAGCCTCGCCACTA CAAGACTTTTTTGTTTGCGTCGCTCTCGAAGGAATATTCCGTGCCAGGCCGCCGCTTCTT AAAGGCTTCTCTGGCTTCGACTCCGACTCCGATAGGTGGTGGTGGAGGCTTTCTCTGATA GGAGGAGAAGGAACCAAGGAGGGAGGCATCAGAAGCGCCATGGATTGCCTCTAGGGCTAT CGAGGAAGGTGCAGACTTCATAGAGACTGATATACTTGCATCAAAGGACGGGCATCTCAT ATGTTTTCATGATGTAACACTGGAAAACACGACCGACATCGGCAACCGTACTGAGTTCGC TGCCCGGAAGAGAACCTATGAAGTCCAGGGAGCGAATATGACTGGGTGGTTTGTCGGTAT ACGAAACTGTGTCTCGATCTTCTTCTGTAGCTAACTTGCTATTTATAACATTTTTTTGCT GTGAATCTACTTTTGACTTTTGGAGTTTTTCTTGCTTCCAGTGGATTTTACACTAAGAGA ACTGAAATCACTGAGGGTGAAACAGCGCTATGATTTCAGGGATCAACAGTATAATTGGAA GTACGATATTCTTACATTTGATGAGTTTATCTTGATTGCACTTCATGCTGACA
Homology of Contig U35_38764 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |