barSeed - Barley Seed Development Database

Probe CUST_19711_PI390587928

Source Contig U35_38765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19711_PI390587928	Hv_44K_v2	CCAGTGCGGAAATTGCTTTGCTCTACTTTCGTTCATGTTTTGCTTTCACATTTATGTACC	49	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.551	1.558	1.151	0.699	0.242	0.268
Raw	2144.753	3368.133	2201.573	2130.048	256.492	309.756

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363899	2150	2e-24	2009 - 2068	100	60 / 60	plus	ABC06228
MLOC	MLOC_72774.1	1862	2e-24	1757 - 1816	100	60 / 60	plus	ABC06228
MLOC	MLOC_72774.4	1583	2e-24	1392 - 1451	100	60 / 60	plus	ABC06228
JLOC1	JLOC1_48424.1	1962	8e-25	1779 - 1838	100	60 / 60	plus
Harvest21	ABC06227	881	3e-25	805 - 864	100	60 / 60	plus
Harvest35	U35_38765	573	3e-25	50 - 109	100	60 / 60	minus

Contig Sequence (573 bp)

>U35_38765 573 Hv_44K_v2
TTTTTTTTTTTTTTTCTACAACCAAAAGTCTCACTGCATAAACAAAATTGGTACATAAAT
GTGAAAGCAAAACATGAACGAAAGTAGAGCAAAGCAATTTCCGCACTGGCGTGATTGAAG
GAACTACAGACAGGTTGCAAGGAAAGCTATAATTAAACTAAACGACGGCATTTGTAAAAC
CATGGAATGGAAGGTTATACAGCAGCTGCTGAAACGACGGTTTTCAGTCTTTTGACGTCA
TGTGCAGGTGAACGGGAGACGTCATCCACGACAGGATCTACCGATGCAGGAGCCTTTTCT
TCGTACGCCGCATCGTGCACGCCAAGAGCGGCGCGGCCAGACGGGTCGAGGAGCTTGGAC
CAGGCAGCATCCCATTCGACAGCTTTAGCGGTGCTGCATGCGACGCTGGGACCTCCTGGC
ACCGTTTGCCTAGCAGCATTCTTGGGATAGAATTTCTCGAACACAGTCCTGTAATAGTAG
GCCTCCTTAGTTGTGGGTGTGTTCTCAGGGTAAACAAAGCTAGCGTTCGTCATCATGGAA
TCCGACACATGTGCACTACCATGGTCCTTCAGT

Homology of Contig U35_38765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g15420.1	592	6e-51	protein\|asparagine synthetase, putative, expressed
Brachypodium v1_2	Bradi2g21050.1	592	8e-54
Arabidopsis v10	None