- Probe CUST_19710_PI390587928
- Source Contig U35_38766
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19710_PI390587928 | Hv_44K_v2 | ACAATACCAGAGATCATTGCAAGATTAAAGCGGGATATAATTCCGACCATAAAAAATGGG | 611 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.297 | 1.432 | 1.551 | 1.146 | 0.472 | 0.354 |
| Raw | 30.013 | 53.231 | 50.605 | 61.243 | 8.186 | 6.086 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69556.2 | 3691 | 2e-24 | 1929 - 1988 | 100 | 60 / 60 | plus | ABC16107 |
| MLOC | MLOC_69555.4 | 1693 | 2e-24 | 1455 - 1514 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_69556.1 | 4753 | 2e-24 | 2898 - 2957 | 100 | 60 / 60 | plus | ABC16107 |
| MLOC | MLOC_69555.1 | 1020 | 2e-24 | 686 - 745 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_69555.2 | 3919 | 2e-24 | 686 - 745 | 100 | 60 / 60 | plus | ABC16107 |
| MLOC | MLOC_69555.3 | 953 | 2e-24 | 684 - 743 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_46092.2 | 3634 | 8e-25 | 1765 - 1824 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_46092.1 | 3298 | 8e-25 | 1429 - 1488 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_46091.3 | 2468 | 8e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46091.2 | 1617 | 8e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46091.1 | 1698 | 8e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34689 | 671 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38766 | 671 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus |
Contig Sequence (671 bp)
>U35_38766 671 Hv_44K_v2 CCCGGGCTGCAGGCTGGACCTTGCACAGAAAACGCAGACCCGCCGCCGCCGCCGTCGCCA TGGTCACCGCCGGAGCTCTCCACGCTGGCAGCCGTGTCCTCCTACCGATCCGCCGAACCT TCAGCACACCCTGGTCCCACGTCCGCTCCCACCTCCACTCCACCAAGCCCTCTTCTGCAC CACTCCCGCCCCCACCTCGGCCGCCGCCTTCTTCCCATGCGGCGTCCACGCGCTTCACCG CTGCCCCTACCAGGAGGAGCGGATCGATCGGGTCCGGGGTAGTCACGTGGTACCTCGGCT CGATCGAGGCGCGGCCGCTGCTGACCAAGAGCATCACGGCTGCTGCAATTTACACCGTTG CTGACCTCACCTCCCAGATGATCACACTTCCTCCCGAGGAGTCACTTGATCTAATTAGGA CTCTGCGCATGGCTAGTTATGGGATGCTGTTCTCAGGACCTTCACTGCACTATTGGTTCA ACTTTATCTCAAAAGTAGTCCCCAAAAGGGATGTAGTGAGCACCTTCAAGAAGATGTTTC TAGGACAAGCAGTTTATGGCCCAATTATTAATTGTATTTTCTTCTCGTATAATGCAGGAT TACAAGGTGAGACAATACCAGAGATCATTGCAAGATTAAAGCGGGATATAATTCCGACCA TAAAAAATGGG
Homology of Contig U35_38766 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g32330.1 | 270 | 9e-84 | protein|peroxisomal membrane protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g06650.1 | 261 | 3e-95 | |
| Arabidopsis v10 | AT5G43140.1 | 254 | 1e-54 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:17321570-17323224 FORWARD LENGTH=254 |