barSeed - Barley Seed Development Database

Probe CUST_19707_PI390587928

Source Contig U35_38769

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19707_PI390587928	Hv_44K_v2	CTTGTTTTCTGTTGTTTTAGTAAACCCTTCCTAAGTTAAGTTGATGATCGAGAATTGCTC	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5108.4	6486	7e-23	3885 - 3944	98	59 / 60	minus	ABC19175 ABC34692
MLOC	MLOC_5108.1	4884	7e-23	3696 - 3755	98	59 / 60	minus	ABC19175 ABC34692
MLOC	MLOC_5108.2	5077	7e-23	3417 - 3476	98	59 / 60	minus	ABC19175 ABC34692
JLOC1	JLOC1_3258.3	3124	4e-23	2619 - 2678	98	59 / 60	plus
JLOC1	JLOC1_3257.1	5103	4e-23	3406 - 3465	98	59 / 60	minus
Harvest21	ABC34692	519	3e-25	19 - 78	100	60 / 60	minus	ABC34692
Harvest35	U35_38769	519	3e-25	19 - 78	100	60 / 60	minus

Contig Sequence (519 bp)

>U35_38769 519 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAGCAATTCTCGATCATCAACTTAACTTAGGAAGGGTTTACT
AAAACAACAGAAAACAAGCAGGAGTGCTTGCACTAAACTAAAGGCATTCTCCTCTATGCT
GGGGATTTTAAGTTGGAGAACAATGCTAAAGGATTACAGCAGAGTGGAACATAGCCCGAA
GAAGAAATACCTACAACTGAACATGGCCACCTTTCCACTATTACTTGAAAATGATATTTA
GGAGTCTTCCTTTGGATATCTCGATCTCCTTCCTCAAGGTATCCATCTCTACTTTGATCA
ATGCATCGACATCAATTAATCCAAGTTCATTGGAAGCTAGCCGGTCTTTTACTTTGACAA
GAATCTGCGCATAGCTCTTTAAAACGGGCTTAACCCTTACTCTTTCCATTAAAGACTTCT
GGACTAAACTCTCATGCTCAGCAACTTGACGCACCAATTTCTGGATTTCATCCTCCATCA
TCATGGACTGGTGCAGGCCTTTGATCTCATACTGAAGGG

Homology of Contig U35_38769 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None