barSeed - Barley Seed Development Database

Probe CUST_19704_PI390587928

Source Contig U35_26792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19704_PI390587928	Hv_44K_v2	ATGATGAAAAAACAGGAAAAGGTGAGTGCCAGGATGCTGCAGAAGATCAGGGACCATGTT	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360039	2904	2e-24	1011 - 1070	100	60 / 60	plus	ABC08797
MLOC	MLOC_18714.1	2514	2e-24	536 - 595	100	60 / 60	plus	ABC08797
JLOC1	JLOC1_12954.1	2527	8e-25	537 - 596	100	60 / 60	plus
Harvest21	ABC25144	703	3e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_26792	703	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_26792 703 Hv_44K_v2
GGTGGTGCCGGTGCCGGTGGCGGTGGCGGCGGCGGGGGCTTCTGGTCGCGGATCTTCTCC
GCCGGCGCGGCGAATGCCGACGACAAGTCGTCGGCCGACTGGGACCCGCATGGCCTCCCG
GCCAACATCACCGTGCCGCTCTCGAAGCTGAGCGGGCTGAAGAGATACAAGTTATCGGAG
CTCAAGTTCTTCGACCGTGCTGCGCCTGGCGGAGGTGGCGCCACCGATGCCGGGCCAGAG
GATTCTTTCTTCGAGATGGTTACTCTGCAGCCAGGCGGCGTGTACACCAAGTCGCAGCTT
CTGAAAGAGCTCGAGACGCTAGTCTCCTGCGGCATGTTCGAGCGGGTTGACCTAGAAGGG
AAGGCCAAACCTGACGGCACCCTTGGCCTCACCGTCTCCTTCACGGAGAGCGTGTGGAGT
GCAGCCAAGCAGTTCAAATGCATCAATGTTGGGCTTATGGCGCAGTCCGGCCAGGCTGAC
TTCGATCAGGACATGACTGAGAGGGAGAAGATGGACTACCTTCGGAAGCAGGAACGTGAT
TACCAGCAGCGTGTCCGCGGCGCCATGCCGTGCATTTTGCCAGAATCCGTCCGAGGGGAG
GTTTTGGCAATGATGAAAAAACAGGAAAAGGTGAGTGCCAGGATGCTGCAGAAGATCAGG
GACCATGTTCAGAAGTGGTACCACAATGAGGGCTTTGTATGCG

Homology of Contig U35_26792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16440.1	818	1e-129	protein\|outer membrane protein, OMP85 family, putative, expressed
Brachypodium v1_2	Bradi1g66820.1	813	5e-139
Arabidopsis v10	AT3G46740.1	818	5e-90	\| Symbols: TOC75-III, MAR1 \| translocon at the outer envelope membrane of chloroplasts 75-III \| chr3:17216104-17219296 REVERSE LENGTH=818