barSeed - Barley Seed Development Database

Probe CUST_19702_PI390587928

Source Contig U35_26795

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19702_PI390587928	Hv_44K_v2	TCTGTTGTTTTGGACGAGTACCTTTGCATTTTCAACTATTGAGGAGATGGATTAAATGCA	627	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.771	1.782	1.222	0.900	0.340	0.385
Raw	742.982	1215.569	712.182	830.109	109.515	134.493

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375150	1779	6e-24	1721 - 1779	100	59 / 59	plus	None
JLOC1	JLOC1_23987.1	793	8e-25	706 - 765	100	60 / 60	plus
Harvest21	ABC48211	590	3e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_26795	695	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_26795 695 Hv_44K_v2
AATTTCCCATGTGAAAATGGAAGATAAAAAACCAATGGAGCAACGGCACCGTGAAAGAAG
ACAACGTTACTCAAGTCNACAGGCTGATACAGCATTCAAGATGAAGGAGTATAAGATGGC
ATCAAAGTGTTATGGTCTGGCAATAGATCATGGTGAGAGTGCAACACTGTATGCAAACAG
GAGTGTCTGTAAACTGCTCATGGGTGATGGTGAAGGTGCTTTGTCAGATGCTCTCAGGTG
CAGAATGCTGAGGCCTGATTGGGCAAAAGCTTGCTACCGTCAAGCCGCAGCTCACATGCT
TCTCAAGGAGTATAAACAAGCCTGTGATGCTCTGTTGGATGCACAAAACTTGGATCCTGG
GAATGATGAGATTGAACGTGAACTACGGAAGGCTAGGGAACTCATGAAGAATCCTCCCGC
TGACGGTGAGCAGTGAGGCGTGGGCGTGCGCAGGCTGGAACATGTTCCGCCATTCGCTAA
AGTAGAGCTATAGCAGGAACTTCCAATCCTTGTGTTCTGACTTCTGATGTGAAATTCACG
TAAAACTCGCATCTGCAGACTGCTAAAACATTACTTCTTGTGAAACCGTCTCGTCTTTCG
CTTGGATTGTACCTGACAAATGCAATTTCTGTTGTTTTGGACGAGTACCTTTGCATTTTC
AACTATTGAGGAGATGGATTAAATGCAAAAAAAAA

Homology of Contig U35_26795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07980.1	282	2e-62	protein\|ankyrin, putative, expressed
Brachypodium v1_2	Bradi2g04680.1	422	3e-72
Arabidopsis v10	None