barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_19697_PI390587928Hv_44K_v2CCAAACTATTGTAATTGCAACTCAGTCCTTGAAATCCAGCAGTATATTATCACCCAAAAA12GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3951.5001.2370.7700.3400.286
Raw 114.839190.700142.747138.34521.18519.400



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_48452.26719e-2268 - 1259858 / 59minus None
MLOCMLOC_48452.17549e-2268 - 1259858 / 59minus None
JLOC1JLOC1_31120.16735e-22549 - 6069858 / 59plus
Harvest35U35_387747353e-2513 - 7210060 / 60minus



Contig Sequence (735 bp)

>U35_38774 735 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGTGATAATATACTGCTGGATTTCAAGGACTGAGTTGCAATT
ACAATAGTTTGGTTTGGCAGAACAAGCTATCTTTGGGGTAGAAACTGACTTTCCAAGATT
ATATGTATGGTGAACTTGATCTTGGGTGAATACTGAAGGCAGCCACCCGTCATGGTGCCA
AATACTGCAAAGTAGGAAAGTTGACCGGCAAGAGCGATAGACAAAGTAGGAAAGTTGACC
GGCAAGTGCCAAATACTGAGTCTTCATCTTCTAACTTTCTTTGATCTTTCTAGAGCTCTT
TTAAGGCTTCCTCCATGCCTTCAACATTTTTTGCATGTTGATCCTTTTCAGATCGAAGCA
TTTCAATGTCACTAACATTCACGTCGCACATGAAGAGGCGTGACGGGTAGATTGAATCTA
CATTTGCTGACAAATGGCCACCATATCTTGATCTGCTCCATCGATAATGGTTACATGGAG
TCCAAAGGTCATTAATACCTAACTTTACCACATCATCTGCGCTTTTATCCACTTGATTTG
TACCTATATACTGCATGGACATAGAAAAGAAGAAAATTTATTTAAAGCCATAACCAGTGC
AACTTGGTGCAGATTCATGAACCGGATACAAGCAGTGTTATACTGATTGATCCACTAAAG
CCTGAGTAATCAAAACATGTTCTACAACAGGAGGAAGCTCNAATTCTTGATCGAGTCTTG
ATGTGATCCCAAGTT



Homology of Contig U35_38774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None