barSeed - Barley Seed Development Database

Probe CUST_19696_PI390587928

Source Contig U35_38775

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19696_PI390587928	Hv_44K_v2	ACGTTGTAAGTTACGATGTTTGTAATGGTGCTTGGAATTTAGAATGTGCTCCTGCTATTC	33	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22011.1	2227	2e-24	2065 - 2124	100	60 / 60	plus	None
MLOC	MLOC_22011.2	2763	2e-24	1977 - 2036	100	60 / 60	plus	None
JLOC1	JLOC1_15260.1	2248	8e-25	1973 - 2032	100	60 / 60	plus
Harvest35	U35_38775	459	3e-25	34 - 93	100	60 / 60	minus

Contig Sequence (459 bp)

>U35_38775 459 Hv_44K_v2
AGTTTTTTTTTTTTTTTTCCCTTTTTTTTTCATGAATAGCAGGAGCACATTCTAAATTCC
AAGCACCATTACAAACATCGTAACTTACAACGTCCTGCTCCTAGCCTGATCAGGGACAGT
CTGCTTGACCCGACTTCTCATTCTCTCTCCCCACTGATGGAACACATTAGATTCATCAAA
TTTCCCTGTAAACTTCACCTTCTGAGCTAATTCAAACAACATGTCCGGCTTCCCAGCCTT
GGAGAAGTCTGCAGCAAATTTGTTGTAGTCTATCTGTGGAGGCCTCATCCCTTTCTGGAT
CATCTCTTCTTTAAATTTACATGCTTCCTCAGGTCTGCCATGCCGTATGTGACCATTAAT
AAACACAGTGTATGAGTTCACATCAGGACAAATCCCCTTCTGATACATCTCCTCCCACAC
AGCGCAACCCATTGCATATTTCCTCCCGCCAAGGAAATA

Homology of Contig U35_38775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28720.1	633	6e-71	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi2g28390.1	650	2e-70
Arabidopsis v10	None