barSeed - Barley Seed Development Database

Probe CUST_19690_PI390587928

Source Contig U35_38785

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19690_PI390587928	Hv_44K_v2	GGCATTCTTCGGTGAGGCCACTTGTAACACCATTTCTTCTTCTGTATGTTGTTTGAAACA	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56925.3	1783	2e-24	1441 - 1500	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.4	1492	2e-24	917 - 976	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
MLOC	MLOC_56925.2	4276	2e-24	3628 - 3687	100	60 / 60	plus	ABC05016 ABC05017 ABC47546
JLOC1	JLOC1_36843.2	2264	8e-25	1520 - 1579	100	60 / 60	plus
JLOC1	JLOC1_36843.1	2268	8e-25	1524 - 1583	100	60 / 60	plus
Harvest21	ABC34707	656	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_38785	656	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_38785 656 Hv_44K_v2
GGCCTGCAGGTTTTTGATACGGTATGCAATGACTGGGTAACTTAGCTCTAAGAGTGATGT
GTACAGTTTTGGAGTTGTTCTTCTGGAGCTATTGACTGGGAGGAAACCTGTCGACCATAC
ATTACCGAGGGGGCAGCAGAGCCTTGTCACATGGGCCACCCCAAGACTGAGTGAAGATAA
GGTTAGGCAATGTGTTGACTCAAGACTTGGAGGGGACTATCCTCCTAAGGCTGTTGCAAA
GGTATCATAAATAGCCTCTCTTGGTTTGGGAACAATGCATGAATTAAGCAGTCTGTGTCA
GTTATCAGTATTTTATAAAGTACAAAGATGAGGAAAACAAAATATTGATTTTACTGGAAC
TTACAAAGCTTGCCATTTTTGTTTTGAATGGGAGTACTAGCTAAGAATTTCATTTCCAGA
AACTGTGTCCCACTACTATGATTAACATCATTCTTGGAGCATGCTTGGTTGCATCTGTCA
TAACTAATTCGAGGCATTCTTCGGTGAGGCCACTTGTAACACCATTTCTTCTTCTGTATG
TTGTTTGAAACAGTTTGCAGCTGTTGCGGCATTGTGCGTCCAATACGAAGCTGACTTCCG
GCCAAACATGAGCATCGTCGTCAAGGCGCTCCAGCCCTTGCTGAACGCGCGAGCAA

Homology of Contig U35_38785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None