- Probe CUST_19688_PI390587928
- Source Contig U35_38787
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19688_PI390587928 | Hv_44K_v2 | GATTGTGTCAACAAGATGGGAATGTACTACTACTTCTGTTTCATAATGTAGTGTATACAG | 44 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.588 | 4.049 | 1.282 | 0.643 | 0.204 | 0.238 |
| Raw | 204.870 | 359.514 | 100.943 | 80.979 | 8.451 | 10.904 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251400.1 | 2884 | 2e-24 | 2817 - 2876 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_62963.1 | 1910 | 2e-24 | 106 - 165 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_62963.2 | 1907 | 2e-24 | 106 - 165 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_41226.1 | 2061 | 8e-25 | 1943 - 2002 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38787 | 573 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (573 bp)
>U35_38787 573 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAATTTACAAAAAAAAATCACAAAATCTGTATACACTACATT ATGAAACAGAAGTAGTAGTACATTCCCATCTTGTTGACACAATCGAGTTCCTAGTTTGCA CATTTGCCAACATTACAATTTGATACGCTACGTTGCTAATATGGTATCTTGTTTCGAAGT CGCTCGCCCATATTCACATATTTTGGTATACTCCATTGTGGCAATTAAAAAGAATCCATG GATCTAATATATACTATACCATATGTTCTACTCATTTGCACATCACGTTGAGATTTAAGT GCTCCTTCCATGAAACGTTTGTGCTGACGGCTTCAAGAGGCACTGCCACTGCTTGAGTCC ACTGAGGACGGCGAGTCTGGGGAAGCATGATAGTGCACTTCAGCGTGTTGCCGCGACTGG TTGCTGAAACTTTGAGCATGGTATGACGGGGCTCGGCGAGACAGGTGCGAGGAATGCTTC TTGCGGTGGCTCATTTTGACGATCGCCATTACGATATCCATGATAGTGGGGAGGAGTCTT GACGAAATAGTCAGAAGTCCAGACACCGTGCCG
Homology of Contig U35_38787 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |