barSeed - Barley Seed Development Database

Probe CUST_19681_PI390587928

Source Contig U35_38795

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19681_PI390587928	Hv_44K_v2	TAGTTAATGAGAGTCTGGGAATCATTGCCAATGCACACGTAGTCTTTGCGGATAGGCAAA	542	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80251.6	2481	2e-24	2396 - 2455	100	60 / 60	minus	ABC12017 ABC44342
MLOC	MLOC_80252.1	2468	2e-24	2383 - 2442	100	60 / 60	minus	ABC12017 ABC44342
MLOC	MLOC_80251.5	3110	2e-24	2856 - 2915	100	60 / 60	minus	ABC12017 ABC44342
MLOC	MLOC_80251.1	3783	2e-24	3522 - 3581	100	60 / 60	minus	ABC12017 ABC44342
MLOC	MLOC_80252.2	2375	2e-24	2290 - 2349	100	60 / 60	minus	ABC12017 ABC44342
MLOC	MLOC_80251.2	3686	2e-24	3425 - 3484	100	60 / 60	minus	ABC12017 ABC44342
JLOC1	JLOC1_53435.6	3500	8e-25	3231 - 3290	100	60 / 60	minus
JLOC1	JLOC1_53435.5	3428	8e-25	3159 - 3218	100	60 / 60	minus
JLOC1	JLOC1_53435.4	3472	8e-25	3203 - 3262	100	60 / 60	minus
JLOC1	JLOC1_53435.3	3726	8e-25	3457 - 3516	100	60 / 60	minus
JLOC1	JLOC1_53435.2	3456	8e-25	3187 - 3246	100	60 / 60	minus
JLOC1	JLOC1_53435.1	3698	8e-25	3429 - 3488	100	60 / 60	minus
Harvest21	ABC34725	616	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_38795	616	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_38795 616 Hv_44K_v2
GATTGTTAAAGAGTTGTTGTTATGTGGCTACCGGCCTGATGTTGAACCATATGTTTCTAT
GCTTCTACAAACCTTTAGAGCATCCAAGCTGCTAGAATTGAAAACGAGGTCAAGGATATT
TGTCCCAAAAGGACGAGCAATGATGGGATGCCTGGATGAAACCCGCACACTGAAGTACGG
ACAGGTATTCATTCAAGCTTCTAATAGTGCAGATGACCGTGGAAAGTCTGTCGTAACTGG
AAAAGTTATCGTTGCCAAAAACCCTTGCATCCACCCTGGTGATATCCGTATTCTCCAGGC
TGTTCATAGTCCTCTTCTGGGCCACATGGTTAACTGTGTTGTCTTTCCACAGCTGGGGCC
AAGGCCTCATCCTAATGAATGTTCAGGGAGTGATCTTGATGGGGACATCTATTTTGTTTC
ATGGGACCCAGATCTCATTCCAACTCGTATGGTGGCGCCTATGGACTATACTCCAGCACC
AACAGAAACATTAGATCATGATGTTATGATTGAGGAAGTACATGAGTATTTCACAAATTA
CATAGTTAATGAGAGTCTGGGAATCATTGCCAATGCACACGTAGTCTTTGCGGATAGGCA
AAGCTTGAAGGCTGAA

Homology of Contig U35_38795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50330.1	741	8e-118	protein\|RNA-dependent RNA polymerase, putative, expressed
Brachypodium v1_2	Bradi3g59910.1	987	6e-118
Arabidopsis v10	AT1G14790.1	1107	2e-97	\| Symbols: RDR1, ATRDRP1 \| RNA-dependent RNA polymerase 1 \| chr1:5094317-5097817 REVERSE LENGTH=1107