barSeed - Barley Seed Development Database

Probe CUST_1967_PI390587928

Source Contig U35_46773

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1967_PI390587928	Hv_44K_v2	TCTATGCACTTGACCTTGGAGGGACAAATTTCCGCGTTTTACGTGTTCAATTACGAGGCA	312	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10933.1	1818	7e-23	369 - 428	98	59 / 60	plus	ABC17401
MLOC	MLOC_10933.2	1770	7e-23	1551 - 1610	98	59 / 60	minus	ABC17401
JLOC1	JLOC1_7196.1	1674	4e-23	135 - 194	98	59 / 60	plus
Harvest21	ABC47305	435	3e-25	313 - 372	100	60 / 60	plus
Harvest35	U35_46773	435	3e-25	313 - 372	100	60 / 60	plus

Contig Sequence (435 bp)

>U35_46773 435 Hv_44K_v2
GACAGAGGCGCAGGCGGTCGGCGGCTATGAGGAACAAGGCGGCGGTGGCGGCGGTCGCGG
CGGCGGCGGCGGCGGTGGGGGTGGCGCTGCTGGCGCGGCGCCAGATGCGGGAGGCCAAGC
GGTGGGGCCGCGCCGACGCCGTGCTGCGGGGCCTCGACGAGCGCTGCGCCGCGCCGCCCG
CCCGCCTGCGCCAGGTCGCCGACGCCGTCGCCGTCGAGATGCACGCCGGACTCGCCTCCG
AGGGCGGCAGCATGCTCGGGATGATCATCAGCTACGTCGACTCCCTCCCCTCGGGGCAAG
AGAAGGGGCTGTTCTATGCACTTGACCTTGGAGGGACAAATTTCCGCGTTTTACGTGTTC
AATTACGAGGCACGGAAGGGCGAGTTGTGAAGCACGATTGTGAAGAGATCTCAATACCGG
CACACTTAATGACCG

Homology of Contig U35_46773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45590.1	495	4e-58	protein\|hexokinase, putative, expressed
Brachypodium v1_2	Bradi2g18877.1	495	9e-59
Arabidopsis v10	None