barSeed - Barley Seed Development Database

Probe CUST_19674_PI390587928

Source Contig U35_9706

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19674_PI390587928	Hv_44K_v2	ATAGCTATTATTTCTGTCGATGGAGCTTTGGCATATAACATGTTCTTTTGTTGTGTGCTA	469	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.031	1.862	1.274	0.800	0.320	0.354
Raw	1497.867	2172.865	1287.108	1262.330	177.839	215.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28291.1	1463	6e-21	1280 - 1338	97	57 / 59	plus
Harvest21	ABC20318	545	3e-25	17 - 76	100	60 / 60	minus	ABC20318
Harvest35	U35_9706	545	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_9706 545 Hv_44K_v2
GCACGAGGTGAGCACGTCGTGGTGCGTGAAATTGCTGATTTGAAGGAAGATGAACAGAAG
CTGAGCGCCGAAGCCGAGACTTTTACCCCAATAGAAACAAGAAGACACATCTGCCGTCTT
GCCAATGCTGTGCGTGTGCTTTCAGCCCTGGGATTCACTCTGACCGTCGAGCTGATAATT
CAGACCGCGGAAGCGAGCATATCATCAAATGTTGAGATAAACGACATGCTTGGGGCTGAA
TTTTACGTTCAGACAGCGGAGAGAGAGGCTAAGCGTCGAGGTGACCTATTGGGAAAGAAG
AGGTAAATCCTATTGGCCCTGCCTGCCTGGCGTGCTGTAAACTGAAAGTGCCGACATGTA
CGAGATATGTAAAAGGAGGTAATGCCACTCGGTGCCCCTGTAGCATACGATTATGACATT
TTGGAGCTTGCCCCACTCTGGTGTGTATGTGTTTTAGGATGGTATTAAGATAGCTATTAT
TTCTGTCGATGGAGCTTTGGCATATAACATGTTCTTTTGTTGTGTGCTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_9706 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None