- Probe CUST_19671_PI390587928
- Source Contig U35_9710
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19671_PI390587928 | Hv_44K_v2 | TGAAAACAGGAGTGAAAGAAGGGAGCACCGTGACCGTTTCGATGACCGCGACTACCGCAG | 400 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.808 | 1.288 | 1.205 | 0.811 | 0.521 | 0.486 |
| Raw | 57.532 | 53.766 | 53.606 | 51.438 | 12.514 | 12.777 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_81043.1 | 471 | 2e-24 | 386 - 445 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_81043.2 | 474 | 2e-24 | 389 - 448 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_53926.2 | 482 | 8e-25 | 378 - 437 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53926.1 | 483 | 8e-25 | 379 - 438 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23085 | 411 | 1e-24 | 353 - 411 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_9710 | 460 | 3e-25 | 401 - 460 | 100 | 60 / 60 | plus |
Contig Sequence (460 bp)
>U35_9710 460 Hv_44K_v2 TCGAGCACTGTTGGCCTCTGGAACCAATCGACCAGAGCCCGTCACGCACGACCCGACCCG AAGCCGCCTCCGCCGCCGCCGCCGACCGGAAACCGACGCGCCGCACCCCACCCCACCCCA TGGCCGAGCACGACGCGCCCCCCGAGGTCAGCGCCGGCGCCGCGAGGTCCCCGCCGTCCA ACAAGCGCGTCGGCGACGCCCGCTCTCCCCAGCAGGACGTGCAGCCTCACAAGGAGAGGT CCTCCAGTTCCAGAGACAGAGGCAGGGAGCGCGATGAGGACAAGGACAGGGAGCGTCACA GGCGCCGTGGGGACGATCGAGAGAGGTACCGGGACAGGGAGAGTGCCCGTGAACGCGGTG AAGGGAGCAGGGATCGTGAGCGCCACCATCGCGAGCACCGTGAAAACAGGAGTGAAAGAA GGGAGCACCGTGACCGTTTCGATGACCGCGACTACCGCAG
Homology of Contig U35_9710 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |