barSeed - Barley Seed Development Database

Probe CUST_19661_PI390587928

Source Contig U35_9722

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19661_PI390587928	Hv_44K_v2	CTGATGTCACAACGTCAAATGTAAGGGACTCAAGTGAGAAAGCTAATGAGGCCAGCAATG	510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370796	1919	2e-24	528 - 587	100	60 / 60	plus	ABC07730 ABC20966
MLOC	MLOC_14543.1	2390	2e-24	1480 - 1539	100	60 / 60	minus	ABC07730 ABC20966
MLOC	MLOC_14543.4	1514	2e-24	1235 - 1294	100	60 / 60	minus	ABC07730 ABC20966
JLOC1	JLOC1_9928.2	1783	8e-25	219 - 278	100	60 / 60	plus
Harvest21	ABC18721	573	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_9722	573	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_9722 573 Hv_44K_v2
GGTTTTCTTCTGCCCCTTCCCACCGCCGCGGGCGACATGGCGACCAGAGGCCGGTGCTAG
GGTTTACGCCGCCGCCACCCCCCCTCCTCCATTGACCCCATATACTCGCGGGCCCTCCCT
CCGTCGAGCCGCATCTCCACCCCAGCCCTCCGCCGCGGGAGCCCGGGTCGCGGCCGTAGC
TCGCCCCGCGCCCAATCGCCGCCGAGCTTATCCCCGAGGTACTCAAAGCTCCTAAGATGG
CGGATGAGGAACATGCTCAAAGCTCTCGGAAGAGGGTTGCAGATAAACAAATCAACAAGG
ACAATCCTGAGCTTGATGATGACTCACCGGAGCAAGAGGGAGGAACATTTAAGAAAGCTA
GTGAGGAAGTGATGGCAACCCGAAAAATTGTAAAGGTTCGGCGCCAACAGCCATCGTCAG
CTCCTTCTTCTAATCCTTTCTCTGCAATTAAGTTTACCACAAATGATTCTAGTGTTCAAA
CAAGTATTTCTGTCTCAAGACCTCCACCTTCTGATGTCACAACGTCAAATGTAAGGGACT
CAAGTGAGAAAGCTAATGAGGCCAGCAATGGAA

Homology of Contig U35_9722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None