barSeed - Barley Seed Development Database

Probe CUST_19659_PI390587928

Source Contig U35_9724

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19659_PI390587928	Hv_44K_v2	CGTGTTTCTCGCCACCATCGTCGGGATCATCACGCAGCCGCTGCCGCTGGGCGCCGTCGC	413	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69205.1	2043	2e-24	543 - 602	100	60 / 60	plus	ABC06765
JLOC1	JLOC1_45846.1	2403	8e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_9724	503	3e-25	414 - 473	100	60 / 60	plus

Contig Sequence (503 bp)

>U35_9724 503 Hv_44K_v2
ATTCTCCCCCCTTCCCTCCCCGCCGCCGCCGTCGACGCCATGGCCTCCTCCGCGTCGGCG
GCCTCGCCGCTCACCTGCCACCACCTCGGCATCCGCCACCGCCCCCACCTCCTCTCATTC
TCCCTCCGCCGCCGCTCCACCTCCTCACCCTCCTCTAAGCCCACCTCCCTCTCCCTCTCC
CACTCCCACTCCTACTCCCTCCCCAAGCCCCTGACCCCGTCCACGGCTCGCCGCCTCCTC
CCGCCCGTCGCCGCGGCGCCGGCATCTCCCCCCGCGCCGGTGTCACCGCCGGCGAAGCCA
GCCCTGAAGGGCGCGGCCCTCAAGCCGCTGCTGGCTTCCATTGCCACGGGGGTCATCATC
TGGTTCATCCCCGCCCCCGCCGGCGTGGCCCGCAACGCGTGGCAGCTGCTCGCCGTGTTT
CTCGCCACCATCGTCGGGATCATCACGCAGCCGCTGCCGCTGGGCGCCGTCGCGCTGCTT
GGCTTGGGCGCCGNCGTGCTCAC

Homology of Contig U35_9724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None